Pre_GI: BLASTP Hits

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Query: NC_016822:3282654:3292590 Shigella sonnei 53G, complete genome

Start: 3292590, End: 3293222, Length: 633

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3151344:315979331597933160485693Shigella sonnei Ss046, complete genomehypothetical protein2e-124444
NC_013941:3540420:354795335479533548645693Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein8e-124442
NC_011415:3217796:322625132262513226943693Escherichia coli SE11 chromosome, complete genomehypothetical protein8e-124442
NC_009800:2995958:300579730057973006489693Escherichia coli HS, complete genomehypothetical protein8e-124442
NC_009801:3175714:318416931841693184861693Escherichia coli E24377A, complete genomehypothetical protein8e-124442
NC_011751:3285646:329416332941633294795633Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-123441
NC_010468:906957:932535932535933167633Escherichia coli ATCC 8739, complete genomehypothetical protein2e-123441
CP002185:3167738:317763731776373178269633Escherichia coli W, complete genomeconserved protein with bipartite regulator domain2e-123441
NC_011750:3407500:341607034160703416702633Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-123441
CP002516:903241:927808927808928440633Escherichia coli KO11, complete genomehypothetical protein2e-123441
CU928160:3030324:303883930388393039471633Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative bipartite regulator domain2e-123441
AP010958:3474077:348259234825923483224633Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved hypothetical protein2e-123441
NC_011741:3030324:303883930388393039471633Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-123441
NC_013353:3474077:348259234825923483224633Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-123441
NC_016902:903241:927808927808928440633Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-123441
NC_013364:3552284:356080535608053561437633Escherichia coli O111:H- str. 11128, complete genomehypothetical protein8e-123439
NC_002655:3769643:377717637771763777868693Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-123439
NC_002695:3702344:370987737098773710569693Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-123439
NC_013008:3761467:376906037690603769692633Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-122438
AC_000091:2976293:298619229861922986824633Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein with bipartite regulator domain1e-122438
NC_000913:2975659:298555829855582986190633Escherichia coli K12, complete genomeconserved protein with bipartite regulator domain1e-122438
NC_010473:3069529:307942830794283080060633Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein with bipartite regulator domain1e-122438
NC_012759:2862807:287270628727062873338633Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-122438
CU928145:3196173:320468832046883205320633Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative bipartite regulator domain1e-122438
NC_011748:3196173:320468832046883205320633Escherichia coli 55989, complete genomeconserved hypothetical protein; putative bipartite regulator domain1e-122438
NC_013361:3867558:387607338760733876705633Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-122438
NC_011353:3805819:381439738143973814966570Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-109393
NC_003198:3881221:389420538942053894822618Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-41169
NC_016832:3858815:386849238684923869109618Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-41169
NC_012125:3879917:388744638874463888063618Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-41168
NC_016863:3905875:391536839153683915985618Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-41167
NC_016860:3964000:397696539769653977582618Salmonella enterica subsp. enterica serovar Typhimurium strRmbA3e-41167
NC_011149:3863913:387856438785643879181618Salmonella enterica subsp. enterica serovar Agona str. SL483,RmbA3e-41167
NC_016845:1407339:142032914203291420946618Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,RmbA1e-27122
NC_014837:1873020:187884418788441879476633Pantoea sp. At-9b chromosome, complete genomeresponse regulator receiver protein7e-27120
NC_016612:2902628:291720829172082917825618Klebsiella oxytoca KCTC 1686 chromosome, complete genomeresponse regulator receiver protein8e-26117
NC_016612:2902628:291034029103402910975636Klebsiella oxytoca KCTC 1686 chromosome, complete genomeLuxR family transcriptional regulator2e-23108
NC_014837:1873020:189961018996101900230621Pantoea sp. At-9b chromosome, complete genomeLuxR family transcriptional regulator3e-23108
NC_014562:1402863:141025514102551410869615Pantoea vagans C9-1 chromosome, complete genomeUncharacterized protein yqeH5e-21101
NC_016845:1407339:141340114134011414096696Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,LuxR family transcriptional regulator5e-21100
NC_012731:1088321:111392611139261114468543Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative regulator1e-0963.2
NC_012947:3487392:350091235009123501454543Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLuxR family transcriptional regulator3e-0961.6
NC_010473:279948:285520285520286110591Escherichia coli str. K-12 substr. DH10B, complete genomepredicted regulator4e-0961.2
NC_000913:303719:309970309970310560591Escherichia coli K12, complete genomepredicted regulator4e-0961.2
AC_000091:303719:309970309970310560591Escherichia coli W3110 DNA, complete genomepredicted regulator4e-0961.2
NC_009800:349592:358203358203358793591Escherichia coli HS, complete genomefimbrillin MatA1e-0860.1
NC_011745:333061:346782346782347372591Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator1e-0859.7
NC_011751:348000:354411354411355001591Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator3e-0858.5
NC_010498:301000:327120327120327662543Escherichia coli SMS-3-5, complete genomefimbrillin MatA5e-0857.8
NC_008253:334467:378039378039378581543Escherichia coli 536, complete genomehypothetical protein YkgK5e-0857.8
NC_008563:318993:322930322930323520591Escherichia coli APEC O1, complete genomehypothetical protein6e-0857.4
NC_004431:364000:385866385866386456591Escherichia coli CFT073, complete genomeHypothetical protein ykgK6e-0857.4
NC_007946:289425:321340321340321930591Escherichia coli UTI89, complete genomehypothetical protein YkgK6e-0857.4
NC_011601:273430:281184281184281774591Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulator6e-0857.4
NC_011742:291237:310705310705311295591Escherichia coli S88 chromosome, complete genometranscriptional regulator6e-0857.4
NC_013941:378555:384127384127384717591Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeMatA7e-0857.4