Pre_GI: BLASTP Hits

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Query: NC_013716:3708415:3714233 Citrobacter rodentium ICC168, complete genome

Start: 3714233, End: 3714961, Length: 729

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:4170464:417859241785924179335744Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain2e-67255
NC_016612:178864:189926189926190666741Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional regulator3e-57221
NC_020063:3690308:372029837202983721065768Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain7e-2097.8
NC_016612:5296076:532264453226445323465822Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional regulator4e-1995.1
NC_014306:1981956:199196619919661992739774Erwinia billingiae Eb661, complete genomePutative response regulator4e-1891.7
NC_020064:1962172:198639919863991986998600Serratia marcescens FGI94, complete genomeDNA-binding protein with winged-HTH domain8e-1787.4
NC_013508:3188978:320403432040343204789756Edwardsiella tarda EIB202, complete genomehypothetical protein2e-1685.9
NC_016514:2079975:209218420921842093011828Enterobacter cloacae EcWSU1 chromosome, complete genometranscriptional Regulator CadC2e-1583.2
NC_008258:3550500:356146835614683562232765Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-1581.3
NC_004337:3590323:360105736010573601821765Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-1480.1
NC_004741:4160500:417218241721824172946765Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-1480.1
NC_017328:3625000:363577336357733636537765Shigella flexneri 2002017 chromosome, complete genomeTranscriptional regulator, CadC1e-1480.1
NC_015663:549425:556228556228557016789Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator2e-1375.9
NC_020181:4800298:482600948260094826797789Enterobacter aerogenes EA1509E, complete genomehypothetical protein2e-1375.9
NC_015663:5253242:526920552692055269951747Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-1375.5
NC_020063:3690308:370139537013953702237843Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain1e-1273.2
NC_020211:103371:114278114278115075798Serratia marcescens WW4, complete genomehypothetical protein6e-1271.2
NC_020181:1317647:132480113248011325454654Enterobacter aerogenes EA1509E, complete genomehypothetical protein3e-1168.9
NC_009832:5214850:522198652219865222753768Serratia proteamaculans 568, complete genometranscriptional regulator, CadC4e-1168.2
NC_013892:1503162:152270715227071523510804Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-1065.9
NC_009832:5214850:522341452234145224184771Serratia proteamaculans 568, complete genometranscriptional regulator, CadC3e-1065.5
NC_007946:4875997:487761548776154878433819Escherichia coli UTI89, complete genomehypothetical protein6e-1064.3
NC_014618:1700784:170658417065841707351768Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC8e-1064.3
NC_015566:5197624:520388652038865204656771Serratia sp. AS12 chromosome, complete genometranscriptional regulator CadC1e-0963.2
NC_015663:1:210462104621852807Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator4e-0962
NC_016514:891772:918584918584919363780Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein6e-0961.2
NC_013850:4993307:499819349981934998837645Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, CadC2e-0859.7
NC_020064:521500:522500522500523297798Serratia marcescens FGI94, complete genomeDNA-binding protein with winged-HTH domain3e-0859.3
NC_016845:411844:429083429083429727645Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-0858.9
NC_012731:403670:420529420529421224696Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transcriptional regulatory protein3e-0858.9
NC_009832:4564752:458819245881924588995804Serratia proteamaculans 568, complete genometranscriptional regulator, CadC3e-0858.9
NC_014121:3453815:346184634618463462583738Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-0857.4
NC_010067:2881448:289265828926582893089432Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0756.6
NC_009648:4958500:497541949754194976093675Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transcriptional regulatory protein2e-0755.8
AP010958:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator4e-0755.1
NC_013353:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator4e-0755.1
NC_011415:3217796:322727732272773228086810Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator4e-0755.1
NC_012759:2862807:287367228736722874481810Escherichia coli BW2952 chromosome, complete genomeputative transcriptional regulator6e-0754.7
NC_000913:2975659:298652429865242987333810Escherichia coli K12, complete genomepredicted transcriptional regulator6e-0754.7
NC_010473:3069529:308039430803943081203810Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator6e-0754.7
AC_000091:2976293:298715829871582987967810Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator6e-0754.7
NC_013941:1314158:132417513241751324987813Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-0754.7
NC_013008:1271621:128205512820551282867813Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-0754.7
NC_011353:1271335:128176912817691282581813Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator6e-0754.7
NC_011748:3196173:320565432056543206463810Escherichia coli 55989, complete genomeputative transcriptional regulator6e-0754.7
CU928145:3196173:320565432056543206463810Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator6e-0754.7
NC_002655:1413244:142326314232631424075813Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-0754.7
NC_002695:1329472:133949113394911340303813Escherichia coli O157:H7 str. Sakai, complete genomeputative transcriptional regulator6e-0754.7
NC_013956:1994970:200213620021362003050915Pantoea ananatis LMG 20103 chromosome, complete genomeYqeI6e-0754.7
CU928160:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator6e-0754.7
NC_009801:3175714:318519531851953186004810Escherichia coli E24377A, complete genometranscriptional regulatory protein, C terminal6e-0754.7
NC_010468:906957:931392931392932201810Escherichia coli ATCC 8739, complete genometranscriptional regulator, CadC5e-0754.7
NC_009800:2995958:300682330068233007632810Escherichia coli HS, complete genometranscriptional regulatory protein, C terminal5e-0754.7
NC_013941:3540420:354897935489793549788810Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesensory transducer6e-0754.7
NC_013008:3761467:377002637700263770835810Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranscriptional regulator6e-0754.7
NC_011353:3805819:381530038153003816109810Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator6e-0754.7
NC_002695:3702344:371090337109033711712810Escherichia coli O157:H7 str. Sakai, complete genomeputative sensory transducer6e-0754.7
NC_016902:903241:926665926665927474810Escherichia coli KO11FL chromosome, complete genometranscriptional regulator CadC6e-0754.7
NC_013364:3552284:356177135617713562580810Escherichia coli O111:H- str. 11128, complete genomeputative transcriptional regulator6e-0754.7
NC_013361:3867558:387703938770393877848810Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional regulator6e-0754.7
NC_011741:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator6e-0754.7
CP002516:903241:926665926665927474810Escherichia coli KO11, complete genometranscriptional regulator, CadC6e-0754.7
CP002185:3167738:317860331786033179412810Escherichia coli W, complete genomepredicted transcriptional regulator6e-0754.7
NC_015566:5197624:520532652053265206096771Serratia sp. AS12 chromosome, complete genometranscriptional regulator CadC7e-0754.3
NC_016816:2508204:251985925198592520752894Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator7e-0754.3
NC_011750:3407500:341703634170363417845810Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator7e-0754.3
NC_011751:3285646:329512932951293295938810Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator7e-0754.3
NC_002655:3769643:377820237782023779011810Escherichia coli O157:H7 EDL933, complete genomeputative sensory transducer6e-0754.3
NC_011149:25760:343783437834815438Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transcription regulator1e-0653.5
NC_017046:25758:343763437634816441Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-0653.1
NC_016831:25760:343773437734817441Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0652.8
NC_011080:25751:343693436934809441Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-0652.8
NC_016810:25803:343763437634816441Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-0652.8
NC_016856:25803:343763437634816441Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator2e-0652.8
NC_016857:25803:343763437634816441Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator2e-0652.8
NC_016860:25758:343763437634816441Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator2e-0652.8
NC_016863:25804:343773437734817441Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator2e-0652.8
NC_011205:25805:343773437734817441Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator2e-0652.8
NC_011274:25692:342643426434704441Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-0652.8
NC_011294:25569:341333413334573441Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-0652.8
NC_011147:25836:344093440934846438Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator3e-0652.4
NC_006511:25796:343693436934806438Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative transcription regulator3e-0652.4
NC_016612:1840325:185718718571871857753567Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transcriptional regulatory protein4e-0652
NC_015663:1934863:194734419473441947895552Enterobacter aerogenes KCTC 2190 chromosome, complete genomeCadC family transcriptional regulator4e-0651.6
NC_020181:3518396:352330035233003523851552Enterobacter aerogenes EA1509E, complete genomeputative transcriptional regulatory protein4e-0651.6
NC_010694:436500:453335453335454240906Erwinia tasmaniensis, complete genomePutative transcriptional regulator5e-0651.6
NC_011094:25762:343803438034817438Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator6e-0651.2
NC_016628:133841:147896147896148507612Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetoxin transcriptional activator ToxR7e-0650.8
NC_003197:25803:343763437634816441Salmonella typhimurium LT2, complete genomeputative transcriptional regulator1e-0550.4