Pre_GI: BLASTP Hits

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Query: NC_013199:282901:299234 Lactobacillus rhamnosus Lc 705, complete genome

Start: 299234, End: 300184, Length: 951

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013198:298000:317201317201318151951Lactobacillus rhamnosus GG, complete genomehigh affinity branched-chain amino acid ABC transporter, permease protein1e-143509
NC_014334:267409:285830285830286780951Lactobacillus casei str. Zhang chromosome, complete genomeputative amino acid ABC transporter permease3e-136484
NC_008526:250000:268989268989269939951Lactobacillus casei ATCC 334, complete genomePredicted amino acid ABC-type transport system, permease component3e-136484
NC_010999:252605:268261268261269211951Lactobacillus casei, complete genomeBranched-chain amino acid ABC transporter, permease protein3e-136484
NC_014831:786011:7909667909667921111146Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter membrane protein 2, HAAT family1e-48194
NC_020291:6426704:644486264448626445827966Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeamino acid/amide ABC transporter membrane protein 2, HAAT family1e-48193
NC_007503:2010858:201490820149082015876969Carboxydothermus hydrogenoformans Z-2901, complete genomehigh affinity branched-chain amino acid ABC transporter, permease protein3e-48192
NC_011297:787932:793781793781794773993Dictyoglomus thermophilum H-6-12, complete genomebranched-chain amino acid ABC transporter permease protein2e-45182
NC_011661:961129:964640964640965623984Dictyoglomus turgidum DSM 6724, complete genomeinner-membrane translocator7e-45181
NC_009617:3184924:3216396321639632174481053Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeinner-membrane translocator5e-45181
NC_013740:15401:195671956720547981Acidaminococcus fermentans DSM 20731, complete genomeinner-membrane translocator1e-43177
NC_003454:2080705:209843520984352099292858Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBranched-chain amino acid transport system permease protein livM3e-39162
NC_015711:3085038:3109577310957731106411065Myxococcus fulvus HW-1 chromosome, complete genomeputative branched chain amino acid ABC transporter permease1e-36153
NC_014614:2295131:231127223112722312138867Clostridium sticklandii, complete genomeInner-membrane translocator precursor1e-35150
NC_012658:545840:548918548918549862945Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative high-affinity branched-chain amino acid ABC transporter permease3e-32139
NC_015275:566000:5688205688205698991080Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit3e-31135
NC_002937:614000:6191546191546203771224Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehigh-affinity branched-chain amino acid ABC transporter, permease protein6e-30131
NC_008751:2774000:2792703279270327939261224Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeinner-membrane translocator5e-30131
NC_014844:2638994:2656306265630626575981293Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeinner-membrane translocator9e-30130
NC_013522:698114:721346721346722218873Thermanaerovibrio acidaminovorans DSM 6589, complete genomeinner-membrane translocator3e-29129
NC_007511:719493:7333997333997346701272Burkholderia sp. 383 chromosome 2, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit3e-29129
NC_005125:2811986:2850775285077528518841110Gloeobacter violaceus PCC 7421, complete genomebranched-chain amino acid transport protein BraE homolog5e-28125
NC_011979:3070110:307011030701103071072963Geobacter sp. FRC-32, complete genomeinner-membrane translocator7e-28124
NC_010552:2089140:2090611209061120918821272Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceinner-membrane translocator1e-27124
NC_015318:981989:996989996989997915927Hippea maritima DSM 10411 chromosome, complete genomeABC transporter integral membrane subunit4e-27122
NC_008061:428501:4431034431034443741272Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceinner-membrane translocator3e-27122
NC_008543:2035292:2035292203529220365631272Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceinner-membrane translocator3e-27122
NC_011001:2517159:2517929251792925192001272Burkholderia cenocepacia J2315 chromosome 2, complete sequenceleucine/isoleucine/valine transporter permease subunit3e-27122
NC_010515:2358134:2374273237427323755441272Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceinner-membrane translocator3e-27122
NC_015953:1581542:1595003159500315968021800Streptomyces sp. SirexAA-E chromosome, complete genomeinner-membrane translocator6e-27121
NC_010676:2658495:2678591267859126797601170Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator2e-26120
NC_009255:1105786:1145385114538511465541170Burkholderia vietnamiensis G4 chromosome 2, complete sequenceinner-membrane translocator2e-26120
NC_010572:6463939:6486413648641364882091797Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative branched-chain amino acid ABC transporter permease protein1e-26120
NC_010805:575709:5970025970025981711170Burkholderia multivorans ATCC 17616 chromosome 2, completebranched-chain amino acid transport system permease protein1e-26120
NC_010086:1816378:1877133187713318783021170Burkholderia multivorans ATCC 17616 chromosome 2, completeinner-membrane translocator1e-26120
NC_013895:1282566:1293495129349512945141020Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete1e-26120
NC_021177:1736854:1748293174829317501251833Streptomyces fulvissimus DSM 40593, complete genomeBranched chain amino acid transport permease9e-27120
NC_015957:8103472:8103472810347281052261755Streptomyces violaceusniger Tu 4113 chromosome, complete genomeABC transporter integral membrane subunit3e-26119
NC_015318:1583839:158961515896151590490876Hippea maritima DSM 10411 chromosome, complete genomeABC transporter integral membrane subunit7e-26118
NC_008702:4064470:4088347408834740894441098Azoarcus sp. BH72, complete genomeputative branched-chain amino acid transport permease6e-26118
NC_015224:279037:2836292836292849151287Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,leucine/isoleucine/valine transporter permease subunit5e-26118
NC_019897:2908971:2913408291340829151981791Thermobacillus composti KWC4 chromosome, complete genomebranched-chain amino acid ABC transporter permease5e-26118
NC_015499:119200:1449201449201459421023Thermodesulfobium narugense DSM 14796 chromosome, complete genomeABC-type transporter, integral membrane subunit1e-25117
NC_016114:5539021:5560448556044855621781731Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeinner-membrane translocator2e-25116
NC_011768:79297:9729197291983641074Desulfatibacillum alkenivorans AK-01, complete genomeinner-membrane translocator2e-25116
NC_008705:3201817:3206705320670532079851281Mycobacterium sp. KMS, complete genomeinner-membrane translocator2e-25116
NC_009718:579291:5821335821335838211689Fervidobacterium nodosum Rt17-B1, complete genomeinner-membrane translocator2e-25116
NC_012724:3222415:3243959324395932451311173Burkholderia glumae BGR1 chromosome 1, complete genomeInner-membrane translocator4e-25115
NC_012108:3824977:3828303382830338301771875Desulfobacterium autotrophicum HRM2, complete genomeABC-type branched-chain amino acid transport system, permease component5e-25115
NC_008785:914411:9375709375709387391170Burkholderia mallei SAVP1 chromosome II, complete sequenceABC transporter, hydrophobic amino acid uptake transporter (HAAT) family, permease protein1e-24114
NC_014376:3214222:3214222321422232153251104Clostridium saccharolyticum WM1 chromosome, complete genomeinner-membrane translocator4e-24112
NC_011742:3799788:3802980380298038042571278Escherichia coli S88 chromosome, complete genomeleucine/isoleucine/valine transporter permease subunit4e-24112
NC_007946:3855445:3855445385544538567221278Escherichia coli UTI89, complete genomehigh-affinity branched-chain amino acid transport system permease protein livM4e-24112
NC_008563:3888232:3888232388823238895091278Escherichia coli APEC O1, complete genomeleucine/isoleucine/valine transporter subunit LivM4e-24112
NC_015422:3836911:3838447383844738395231077Alicycliphilus denitrificans K601 chromosome, complete genomeABC transporter integral membrane subunit1e-23110
NC_016582:9422650:9440777944077794425161740Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative branched-chain amino acid ABC transporter permease1e-23110
NC_013939:913890:930581930581931426846Deferribacter desulfuricans SSM1, complete genomebranched-chain amino acid ABC transporter permease3e-23109
NC_012791:2233098:2246354224635422475501197Variovorax paradoxus S110 chromosome 1, complete genomeinner-membrane translocator2e-23109
NC_005773:694990:6999396999397012521314Pseudomonas syringae pv. phaseolicola 1448A, complete genomehigh-affinity branched-chain amino acid ABC transporter, permease protein BraE4e-23108
NC_010003:528855:5474935474935492081716Petrotoga mobilis SJ95, complete genomeinner-membrane translocator1e-22107
NC_003155:7453994:7473858747385874756331776Streptomyces avermitilis MA-4680, complete genomebranched-chain amino acid ABC transporter permease protein1e-22107
NC_013510:3324978:3332076333207633332571182Thermomonospora curvata DSM 43183, complete genomeinner-membrane translocator1e-22107
NC_014153:1663597:1675237167523716762711035Thiomonas intermedia K12 chromosome, complete genomeinner-membrane translocator2e-22107
NC_015556:819503:8333088333088345821275Pseudomonas fulva 12-X chromosome, complete genomeinner-membrane translocator6e-22105
NC_010557:679656:6929566929566941251170Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceinner-membrane translocator9e-22104
NC_016633:1898234:1897221189722118982371017Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebranched-chain amino acid ABC transporter permease7e-22104
NC_016147:2820232:282635928263592827195837Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeinner-membrane translocator7e-22104
NC_008786:3323167:3346604334660433476801077Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator4e-21102
NC_016906:3006748:3009121300912130103261206Gordonia polyisoprenivorans VH2 chromosome, complete genomehigh-affinity branched-chain amino acid transport system permease protein BraE4e-21102
NC_021066:1393750:1408936140893614102221287Raoultella ornithinolytica B6, complete genomeBranched-chain amino acid transport system permease protein LivM8e-21101
NC_017059:469108:4891294891294902501122Rhodospirillum photometricum DSM 122, complete genomeInner-membrane translocator6e-2098.2
NC_011060:2099255:210653921065392107402864Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator3e-1996.3
NC_004193:701622:719968719968720954987Oceanobacillus iheyensis HTE831, complete genomebranched-chain amino acid ABC transporter permease3e-1995.9
NC_014831:2133060:2170027217002721727202694Thermaerobacter marianensis DSM 12885 chromosome, complete genomeABC transporter related protein4e-1995.9
NC_014098:3133440:3133440313344031344711032Bacillus tusciae DSM 2912 chromosome, complete genomeinner-membrane translocator4e-1995.5
NC_008786:4216152:423616342361634237110948Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator8e-1994.7
NC_010172:3712000:3731947373194737337281782Methylobacterium extorquens PA1, complete genomeABC transporter related9e-1994.4
NC_008148:2053467:2056112205611220572691158Rubrobacter xylanophilus DSM 9941, complete genomeinner-membrane translocator1e-1894
NC_007948:360199:371010371010371945936Polaromonas sp. JS666, complete genomeinner-membrane translocator2e-1893.2
NC_010725:3992948:4015262401526240170431782Methylobacterium populi BJ001, complete genomeABC transporter related2e-1893.2
NC_012988:4075429:4097873409787340996541782Methylobacterium extorquens DM4, complete genomebranched chain amino acid ABC transporter ATPase/permease3e-1892.8
NC_013524:392089:4069004069004088221923Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeABC transporter related protein4e-1892.4
NC_014837:1144500:1166422116642211688902469Pantoea sp. At-9b chromosome, complete genomeABC transporter-like protein2e-1790.5
NC_017192:1063955:106606210660621067027966Arcobacter sp. L, complete genomebranched-chain amino acid ABC transporter permease component3e-1789.4
NC_010729:1462135:147325514732551474157903Porphyromonas gingivalis ATCC 33277, complete genomeprobable ABC transporter membrane protein4e-1789
NC_014830:3438504:3477396347739634784031008Intrasporangium calvum DSM 43043 chromosome, complete genomeinner-membrane translocator6e-1788.2
NC_011894:4013830:403506640350664035953888Methylobacterium nodulans ORS 2060, complete genomeinner-membrane translocator2e-1687
NC_010645:1341475:1364542136454213663351794Bordetella avium 197N, complete genomeABC tranpsorter, ATP binding/permease protein2e-1687
NC_010424:697187:7023527023527033591008Candidatus Desulforudis audaxviator MP104C, complete genomeinner-membrane translocator3e-1686.3
NC_018581:3202281:320353832035383204527990Gordonia sp. KTR9 chromosome, complete genomeABC-type branched-chain amino acid transport system, permease component2e-1583.6
NC_005296:4574213:4575257457525745763301074Rhodopseudomonas palustris CGA009, complete genomeputative branched-chain amino acid transport system permease protein2e-1583.2
NC_008786:3045770:3067394306739430684701077Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator2e-1583.2
NC_010511:4258000:427983542798354280722888Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator4e-1582.4
NC_007963:1582089:160600116060011606945945Chromohalobacter salexigens DSM 3043, complete genomeinner-membrane translocator1e-1377.4
NC_007604:2555000:257481925748192575742924Synechococcus elongatus PCC 7942, complete genomeputative branched-chain amino acid ABC transporter, permease protein1e-1377.4
NC_009436:2685910:2689212268921226905011290Enterobacter sp. 638, complete genomeinner-membrane translocator2e-1376.6
NC_009092:3057319:3074392307439230754651074Shewanella loihica PV-4, complete genomeinner-membrane translocator4e-1375.9
NC_007645:1245927:1263558126355812648531296Hahella chejuensis KCTC 2396, complete genomeABC-type branched-chain amino acid transport system, permease component7e-1374.7
NC_011060:1898224:193093419309341931929996Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator1e-1274.3
NC_007626:2204767:220550122055012206490990Magnetospirillum magneticum AMB-1, complete genomeABC-type branched-chain amino acid transport system2e-1273.2
NC_014210:3763940:377551037755103776499990Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,inner-membrane translocator6e-1272
NC_010511:6169468:618855961885596189512954Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator2e-1170.1
NC_020210:2044944:2050274205027420512811008Geobacillus sp. GHH01, complete genomeputative leucine ABC transporter permease4e-1169.3
NC_018524:4049990:406945440694544070437984Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebranched-chain amino acid transport system / permease component family protein6e-1168.6
NC_007953:572926:582809582809583807999Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit8e-1168.2
NC_014931:6203872:6204965620496562060291065Variovorax paradoxus EPS chromosome, complete genomeinner-membrane translocator2e-1067
NC_010170:1219641:122504712250471225991945Bordetella petrii, complete genomebranched-chain amino acid ABC transporter, permease protein2e-1066.6
NC_008687:229941:2376482376482386641017Paracoccus denitrificans PD1222 chromosome 2, complete sequenceinner-membrane translocator6e-1065.1
NC_014831:2133060:2139824213982421408641041Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter membrane protein 2, HAAT family3e-0963.2
NC_009073:803372:806848806848807813966Pyrobaculum calidifontis JCM 11548, complete genomeinner-membrane translocator3e-0962.8
NC_010676:2720068:272449027244902725470981Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator6e-0962
NC_008786:5128363:514039451403945141326933Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator8e-0961.2
NC_007336:66000:7065970659716901032Ralstonia eutropha JMP134 megaplasmid, complete sequenceinner-membrane translocator2e-0860.5
NC_011884:831905:8564238564238577331311Cyanothece sp. PCC 7425, complete genomeinner-membrane translocator5e-0858.9
NC_006576:2328427:2349450234945023505291080Synechococcus elongatus PCC 6301, complete genomeABC-type Nat permease for neutral amino acids7e-0858.2
NC_018581:3202281:3216933321693332197612829Gordonia sp. KTR9 chromosome, complete genomeABC-type branched-chain amino acid transport systems, ATPase component8e-0858.2
NC_010170:3944228:396496539649653965918954Bordetella petrii, complete genomeBranched-chain amino acid transport system, permease component9e-0857.8
NC_015458:3077804:3095936309593630969491014Pusillimonas sp. T7-7 chromosome, complete genomeputative branched-chain amino acid transport permease4e-0755.8
NC_018000:1914945:1938012193801219391241113Sinorhizobium fredii USDA 257 chromosome, complete genomebranched-chain amino acid ABC transporter permease4e-0755.8
NC_013939:913890:929718929718930581864Deferribacter desulfuricans SSM1, complete genomebranched-chain amino acid ABC transporter permease5e-0755.5
NC_007908:1108494:1153859115385911548601002Rhodoferax ferrireducens T118, complete genomeinner-membrane translocator6e-0755.1
NC_007643:3799425:380586938058693806813945Rhodospirillum rubrum ATCC 11170, complete genomeinner-membrane translocator7e-0755.1
NC_008699:2294361:2294361229436122961811821Nocardioides sp. JS614, complete genomeABC transporter related8e-0754.7
NC_006569:69939:977659776598703939Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencebranched-chain amino acid ABC transporter, permease protein1e-0654.3
NC_015948:2421933:2421933242193324230541122Haloarcula hispanica ATCC 33960 chromosome chromosome I, completebranched-chain amino acid ABC transporter permease2e-0653.1
NC_011894:2125474:2124458212445821254771020Methylobacterium nodulans ORS 2060, complete genomeinner-membrane translocator4e-0652.8
NC_011001:302500:3147633147633158361074Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative branched-chain amino acid transporter3e-0652.8
NC_008701:1363665:138788413878841388849966Pyrobaculum islandicum DSM 4184, complete genomeinner-membrane translocator3e-0652.8
NC_013592:3263005:328062732806273281514888Dickeya dadantii Ech586, complete genomeinner-membrane translocator4e-0652.4
NC_010002:4890192:490904449090444910006963Delftia acidovorans SPH-1, complete genomeinner-membrane translocator4e-0652.4
NC_015563:2656628:265755126575512658513963Delftia sp. Cs1-4 chromosome, complete genomeABC transporter integral membrane protein4e-0652.4
NC_007298:2947200:296968429696842970646963Dechloromonas aromatica RCB, complete genomeinner-membrane translocator6e-0652
NC_009434:3434381:3457774345777434587811008Pseudomonas stutzeri A1501, complete genomebranched-chain amino acid ABC transporter, permease protein6e-0651.6