Pre_GI Gene

Some Help

Host: NC_007953 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007953:572926 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5729265742151290Mn2Fe2 transporter NRAMP familyQuickGO ontologyBLASTP
574258574809552hypothetical proteinBLASTP
575063575872810hypothetical proteinBLASTP
575927576430504Putative lipoproteinQuickGO ontologyBLASTP
576520577320801hypothetical proteinBLASTP
5779525790101059Transcriptional regulator LysR familyQuickGO ontologyBLASTP
579114579947834Putative HpcHHpaI aldolaseQuickGO ontologyBLASTP
5807435819271185ABC branched chain amino acid family transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
581940582812873ABC branched chain amino acid family transporter inner membrane subunitQuickGO ontologyBLASTP
582809583807999ABC branched chain amino acid family transporter inner membrane subunitQuickGO ontologyBLASTP
583804584535732ABC branched chain amino acid family transporter ATPase subunitQuickGO ontologyBLASTP
584528585232705ABC branched chain amino acid family transporter ATPase subunitQuickGO ontologyBLASTP
585645586466822Putative enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
586500587303804Putative enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
5873065894322127Putative CoA ligaseQuickGO ontologyBLASTP
589534589956423Putative carboxymuconolactone decarboxylaseQuickGO ontology
5905215916211101outer membrane porin OmpC familyQuickGO ontologyBLASTP
5920825927897083-oxoacid CoA-transferase subunit AQuickGO ontologyBLASTP
5927905934256363-oxoacid CoA-transferase subunit BQuickGO ontologyBLASTP
593431594228798Acetyl-CoA C-acetyltransferaseQuickGO ontologyBLASTP
594489595337849hypothetical proteinBLASTP
595494596417924Putative hydrolaseQuickGO ontologyBLASTP
596650596856207hypothetical protein
596866597480615Transcriptional regulator TetR familyQuickGO ontologyBLASTP
5975125987591248Putative FAD-dependent pyridine nucleotide- disulphide oxidoreductaseQuickGO ontologyBLASTP
5987666000281263putative major facilitator superfamily MFStransporterQuickGO ontologyBLASTP
6000776012641188hypothetical proteinBLASTP
601264601677414hypothetical proteinBLASTP
601850602545696Putative short-chain dehydrogenasereductaseQuickGO ontologyBLASTP
602545603042498hypothetical proteinBLASTP