Pre_GI Gene

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Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:3057319 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
305731930589051587peptidase M28QuickGO ontologyBLASTP
305912030608441725AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
30609533061225273hypothetical protein
30613733061678306hypothetical proteinBLASTP
306218730638961710prolyl-tRNA synthetaseQuickGO ontologyBLASTP
30640093064725717hypothetical protein
30650723065479408hypothetical protein
30656593065994336transcriptional regulator HxlR familyQuickGO ontologyBLASTP
30664723066813342hypothetical protein
30669223067329408hypothetical protein
30683673068666300hypothetical protein
30687623069088327hypothetical proteinBLASTP
30692243070024801restriction endonucleaseQuickGO ontologyBLASTP
307090630721321227putative phenylacetate-coenzyme A ligaseQuickGO ontologyBLASTP
30721423072960819ABC transporter-related proteinQuickGO ontologyBLASTP
307302430742681245putative branched-chain amino acid ABC transporterQuickGO ontologyBLASTP
307439230754651074inner-membrane translocatorQuickGO ontologyBLASTP
30755263076419894inner-membrane translocatorQuickGO ontologyBLASTP
307641630783831968AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
30783833079180798ABC transporter-related proteinQuickGO ontologyBLASTP
307929930803391041hypothetical proteinBLASTP
308059730840973501integral membrane sensor hybrid histidine kinaseQuickGO ontologyBLASTP