Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:2555000 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
255500325563911389serine phosphataseQuickGO ontologyBLASTP
25564472556608162hypothetical proteinBLASTP
255669225581161425argininosuccinate lyaseQuickGO ontologyBLASTP
25582562558591336hypothetical proteinBLASTP
25585882559484897hypothetical proteinBLASTP
25595002559874375photosystem II reaction center W proteinQuickGO ontologyBLASTP
25603752560941567pilin-like proteinQuickGO ontologyBLASTP
25609462561848903Prolyl 4-hydroxylase alpha subunitQuickGO ontologyBLASTP
256183625630681233hypothetical proteinBLASTP
25631112563704594hypothetical proteinBLASTP
256368025651641485hypothetical proteinBLASTP
25652972565989693hypothetical proteinBLASTP
25661352566728594hypothetical proteinBLASTP
256672525683051581hypothetical proteinBLASTP
25686132568831219hypothetical proteinBLASTP
25689032569511609hypothetical proteinBLASTP
25695942569869276hypothetical proteinBLASTP
25699642570884921tRNA delta2-isopentenylpyrophosphate transferaseQuickGO ontologyBLASTP
257101225729491938DNA gyrase B subunitQuickGO ontologyBLASTP
25733552574068714ATPaseQuickGO ontologyBLASTP
25740612574822762ATPaseQuickGO ontologyBLASTP
25748192575742924putative branched-chain amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
25757462576687942integral membrane protein of the ABC-type Nat permease for neutral amino acids NatDQuickGO ontologyBLASTP
257668725778861200branched-chain amino-acid ABC transport system periplasmic binding proteinQuickGO ontologyBLASTP