Pre_GI Gene

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Host: NC_010572 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010572:6463939 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
64639396464700762hypothetical proteinBLASTP
64647546465326573putative acetyltransferaseQuickGO ontologyBLASTP
64653466466101756hypothetical proteinBLASTP
64661326467034903hypothetical proteinBLASTP
64674186468185768trypsin precursorQuickGO ontologyBLASTP
646825364701451893putative beta-galactosidaseQuickGO ontologyBLASTP
64703716471249879putative AraC-family transcriptional regulatorQuickGO ontologyBLASTP
64713146471676363putative chorismate mutaseQuickGO ontologyBLASTP
647192064745082589putative aminopeptidase NQuickGO ontologyBLASTP
64746056475003399putative ArsR-family transcriptional regulatorQuickGO ontologyBLASTP
647555464770021449putative amino acid decarboxylaseQuickGO ontologyBLASTP
647699964784261428putative monooxygenaseQuickGO ontologyBLASTP
647879964806251827putative 5-nucleotidaseQuickGO ontologyBLASTP
64807656481481717hypothetical proteinBLASTP
648160264830411440putative pyruvate kinaseQuickGO ontologyBLASTP
64830486483848801hypothetical proteinBLASTP
6483928648400275tRNA-LeuQuickGO ontology
64841006484756657putative two-component system response regulatorQuickGO ontologyBLASTP
64847756485491717putative branched-chain amino acid ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
64854886486408921putative branched-chain amino acid ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
648641364882091797putative branched-chain amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
64882066489135930putative branched-chain amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
648925064904431194putative branched-chain amino acid ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
64910946491564471hypothetical proteinBLASTP
64917886492207420hypothetical protein
649236464946882325putative formate dehydrogenaseQuickGO ontologyBLASTP