Pre_GI Gene

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Host: NC_015275 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015275:566000 Clostridium lentocellum DSM 5427 chromosome, complete genome

Host Lineage: Cellulosilyticum lentocellum; Cellulosilyticum; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: River sediment with paper mill waste; Temp: Mesophile; Temp: 40C; Isolation:river sediment with paper mill waste; Country:United Kingdom: River Don, Scotland. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This is a cellulolytic bacterium isolated from river sediment containing paper-mill waste.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
56604456611774tRNA-HisQuickGO ontology
5665635677501188Extracellular ligand-binding receptorQuickGO ontologyBLASTP
567909568808900ABC-type transporter integral membrane subunitQuickGO ontologyBLASTP
5688205698991080ABC-type transporter integral membrane subunitQuickGO ontologyBLASTP
569903570667765Monosaccharide-transporting ATPaseQuickGO ontologyBLASTP
570670571383714Fe3-transporting ATPaseQuickGO ontologyBLASTP
57371457378673tRNA-AlaQuickGO ontologyBLASTP
5771625785261365MATE efflux family proteinQuickGO ontologyBLASTP
5792565804371182Cystathionine beta-lyaseQuickGO ontologyBLASTP
5807455827812037peptidase M28QuickGO ontologyBLASTP
5829255840041080Ethanolamine utilization protein EutHQuickGO ontologyBLASTP
5842595859831725hypothetical proteinBLASTP
5863115878221512glycerol kinaseQuickGO ontologyBLASTP
5879595891491191protein of unknown function DUF1006QuickGO ontologyBLASTP
589222589797576DNA-binding SAP domain proteinQuickGO ontologyBLASTP
589991590869879pyridoxine biosynthesis proteinQuickGO ontologyBLASTP
590850591440591pyridoxal 5-phosphate synthase glutaminase subunit Pdx2QuickGO ontologyBLASTP