Pre_GI: BLASTP Hits

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Query: NC_011961:891815:892614 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 892614, End: 893204, Length: 591

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016645:245000:246722246722247273552Pyrobaculum sp. 1860 chromosome, complete genomehypothetical protein9e-29126
NC_015574:1845000:185881718588171859275459Methanobacterium sp. SWAN-1 chromosome, complete genomeYbhB YbcL family protein5e-28124
NC_000916:191561:209246209246209701456Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein3e-26117
NC_007517:1107408:112365711236571124187531Geobacter metallireducens GS-15, complete genomeYbhB and YbcL1e-25116
NC_007355:3580100:359783135978313598415585Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein1e-21102
NC_020389:2439067:243906724390672439660594Methanosarcina mazei Tuc01, complete genomePhospholipid-binding protein2e-21102
NC_013741:27353:452354523545756522Archaeoglobus profundus DSM 5631, complete genomePEBP family protein3e-21101
NC_007645:2922190:292293329229332923412480Hahella chejuensis KCTC 2396, complete genomePhospholipid-binding protein9e-21100
NC_011884:2584791:260420626042062604679474Cyanothece sp. PCC 7425, complete genomePEBP family protein1e-2099.4
NC_007963:2644930:265125926512592651735477Chromohalobacter salexigens DSM 3043, complete genomeYbhB and YbcL2e-2099
NC_019892:5171629:518949251894925189965474Singulisphaera acidiphila DSM 18658 chromosome, complete genomeRaf kinase inhibitor-like protein, YbhB/YbcL family2e-2098.6
NC_007347:1239982:126166212616621262228567Ralstonia eutropha JMP134 chromosome 1, complete sequenceYbhB and YbcL7e-2097.1
NC_010162:7620000:763660376366037637082480Sorangium cellulosum 'So ce 56', complete genomehypothetical protein7e-2097.1
NC_000117:845141:849067849067849519453Chlamydia trachomatis D/UW-3/CX, complete genomehypothetical protein3e-1891.7
NC_019964:930966:935656935656936153498Halovivax ruber XH-70, complete genomeRaf kinase inhibitor-like protein, YbhB/YbcL family4e-1581.3
NC_013959:2801557:282341728234172823893477Sideroxydans lithotrophicus ES-1 chromosome, complete genomePEBP family protein3e-1478.2
NC_003197:1170746:117217211721721172720549Salmonella typhimurium LT2, complete genomeputative outer membrane protein1e-1376.6
NC_016810:1126693:112849411284941129042549Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1376.6
NC_016856:1128715:113051611305161131064549Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative outer membrane protein1e-1376.6
NC_016857:1126693:112849411284941129042549Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative outer membrane protein1e-1376.6
NC_016860:1168431:116985711698571170405549Salmonella enterica subsp. enterica serovar Typhimurium strputative outer membrane protein1e-1376.6
NC_016863:1128381:112980711298071130355549Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative outer membrane protein1e-1376.6
NC_011274:1057887:105931310593131059861549Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-1376.3
NC_011083:1173802:117689711768971177445549Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-1376.3
NC_011294:1048223:105002410500241050572549Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-1376.3
NC_012125:2687980:270254627025462703094549Salmonella enterica subsp. enterica serovar Paratyphi C strainouter membrane protein1e-1376.3
NC_011149:1035990:104172810417281042276549Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-1376.3
NC_017046:1127325:112878411287841129299516Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-1375.9
NC_011094:1127983:113107811310781131626549Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1375.9
NC_010102:2020762:203531720353172035865549Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1375.9
NC_011205:1147556:115065111506511151199549Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-1375.9
NC_016514:1627664:162903016290301629587558Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YbcL6e-1373.9
NC_007912:1924392:194016219401621940734573Saccharophagus degradans 2-40, complete genomephospholipid-binding protein6e-1373.9
NC_016831:1950650:196521419652141965762549Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-1272.8
NC_013508:2356865:238442323844232384974552Edwardsiella tarda EIB202, complete genomeDLP12 prophage; predicted kinase inhibitor6e-1270.5
NC_012779:2424967:244479824447982445349552Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-1169.3
NC_004129:195347:210070210070210630561Pseudomonas fluorescens Pf-5, complete genomeconserved hypothetical protein TIGR00481, putative1e-1169.3
NC_010622:2385932:240427624042762404785510Burkholderia phymatum STM815 chromosome 1, complete sequencePEBP family protein1e-1169.3
NC_012967:531000:542783542783543334552Escherichia coli B str. REL606 chromosome, complete genomeputative kinase inhibitor6e-1167
NC_012947:3231893:324234532423453242896552Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completekinase inhibitor6e-1167
NC_012759:461680:472876472876473427552Escherichia coli BW2952 chromosome, complete genomeputative kinase inhibitor6e-1167
NC_000913:558920:570116570116570667552Escherichia coli K12, complete genomeDLP12 prophage; predicted kinase inhibitor6e-1167
NC_010473:498252:509448509448509999552Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted kinase inhibitor6e-1167
AC_000091:558920:570116570116570667552Escherichia coli W3110 DNA, complete genomepredicted kinase inhibitor6e-1167
NC_013941:699286:710239710239710790552Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphatidylethanolamine-binding protein2e-1065.5
NC_013008:2910567:292261229226122923163552Escherichia coli O157:H7 str. TW14359 chromosome, complete genomekinase inhibitor2e-1065.5
NC_013517:4208939:426000842600084260550543Sebaldella termitidis ATCC 33386, complete genomePEBP family protein5e-1064.3
NC_013592:1056500:106081310608131061394582Dickeya dadantii Ech586, complete genomePEBP family protein6e-1063.9
NC_018750:1591895:160247616024761603015540Streptomyces venezuelae ATCC 10712, complete genomePhospholipid-binding protein6e-1063.9
NC_013353:867869:881393881393881869477Escherichia coli O103:H2 str. 12009, complete genomekinase inhibitor7e-1063.9
AP010958:867869:881393881393881869477Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted kinase inhibitor7e-1063.9
NC_012559:2353236:237554523755452376099555Laribacter hongkongensis HLHK9, complete genomeputative phospholipid-binding protein8e-1063.5
NC_011601:756885:771868771868772344477Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomekinase inhibitor protein1e-0963.2
NC_002655:919654:931451931451931927477Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-0962.8
NC_002695:917509:929799929799930275477Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0962.8
NC_011353:921500:933164933164933640477Escherichia coli O157:H7 str. EC4115 chromosome, complete genomekinase inhibitor protein2e-0962.8
NC_012967:786534:800059800059800535477Escherichia coli B str. REL606 chromosome, complete genomeputative kinase inhibitor protein2e-0962.8
NC_013008:918215:934757934757935233477Escherichia coli O157:H7 str. TW14359 chromosome, complete genomekinase inhibitor protein2e-0962.8
NC_013941:1014386:102682910268291027305477Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-0962.8
NC_008686:1383891:141573814157381416283546Paracoccus denitrificans PD1222 chromosome 1, complete sequencePEBP family protein8e-0960.5
NC_014118:1559770:157122815712281571800573Burkholderia sp. CCGE1002 chromosome chromosome 2, completePEBP family protein8e-0960.5
NC_014830:532122:533799533799534236438Intrasporangium calvum DSM 43043 chromosome, complete genomePEBP family protein2e-0858.9
NC_015957:8845274:8866898886689888698762979Streptomyces violaceusniger Tu 4113 chromosome, complete genomecarbohydrate binding family 64e-0857.8
NC_008391:699222:710842710842711414573Burkholderia cepacia AMMD chromosome 2, complete sequenceYbhB and YbcL7e-0857
NC_015381:3457784:350546335054633505966504Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein7e-0857
NC_009664:570768:587546587546588061516Kineococcus radiotolerans SRS30216, complete genomePEBP family protein9e-0856.6
NC_009901:1516340:151984615198461520373528Shewanella pealeana ATCC 700345, complete genomePEBP family protein1e-0756.6
NC_010334:1561691:156511715651171565644528Shewanella halifaxensis HAW-EB4, complete genomePEBP family protein5e-0754.3
NC_003198:1078113:108120810812081081755548Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0754.3
NC_014121:4043198:406973640697364070212477Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0653.1
NC_015859:1631573:165334016533401653900561Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein2e-0652.8
NC_014215:492855:512935512935513399465Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Phosphatidylethanolamine-binding protein7e-0650.4
NC_015434:6508500:651538865153886515921534Verrucosispora maris AB-18-032 chromosome, complete genomePEBP family protein7e-0650.4