Pre_GI Gene

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Host: NC_003197 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:1170746 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
117074611719571212putative SAM-dependent methyltransferaseQuickGO ontologyBLASTP
11721721172720549putative outer membrane proteinQuickGO ontologyBLASTP
11727461173525780bacterial regulatory proteinQuickGO ontologyBLASTP
11735741173855282putative phosphohydrolaseQuickGO ontologyBLASTP
11738521174181330putative sulfite reductase gamma subunitQuickGO ontologyBLASTP
11742681174927660putative transport proteinQuickGO ontologyBLASTP
1175321117540585tRNA-SerQuickGO ontologyBLASTP
11755481176228681pathogenicity island-encoded protein AQuickGO ontologyBLASTP
11764501177325876secreted effector proteinQuickGO ontologyBLASTP
11775431177863321putative inner membrane proteinQuickGO ontologyBLASTP
11778731178214342pathogenicity island-encoded protein CQuickGO ontologyBLASTP
117823111799161686secreted effector proteinQuickGO ontologyBLASTP
11802481180418171putative cytoplasmic proteinQuickGO ontologyBLASTP
11804191180529111putative cytoplasmic proteinQuickGO ontologyBLASTP
118063811821071470pathogenicity island-encoded protein DQuickGO ontologyBLASTP
118228011836441365copper resistance proteinQuickGO ontologyBLASTP
11836371184383747copper resistance proteinQuickGO ontologyBLASTP
11844531184863411hypothetical proteinBLASTP
118519611857085134-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP
1185726118728815634-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP
118750611879464414-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP
1188221118951012904-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP
1189507119097314674-hydroxyphenylacetate catabolismQuickGO ontologyBLASTP