Pre_GI: BLASTP Hits

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Query: NC_009664:533021:552695 Kineococcus radiotolerans SRS30216, complete genome

Start: 552695, End: 554308, Length: 1614

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013093:2599591:2603991260399126056701680Actinosynnema mirum DSM 43827, complete genomeflagellar M-ring protein FliF3e-62239
NC_011899:1807365:1809171180917118107301560Halothermothrix orenii H 168, complete genomeflagellar M-ring protein FliF2e-50200
NC_015966:2337833:2374604237460423762051602Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeflagellar M-ring protein FliF3e-45183
NC_010424:1857062:1857062185706218586181557Candidatus Desulforudis audaxviator MP104C, complete genomeflagellar M-ring protein FliF5e-45182
NC_009778:1222273:1225359122535912270561698Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-44179
NC_016816:1912366:1917144191714419188621719Pantoea ananatis LMG 5342, complete genomeflagellar M-ring protein FliF8e-44178
NC_014837:2586870:2602754260275426044691716Pantoea sp. At-9b chromosome, complete genomeflagellar M-ring protein FliF6e-43176
NC_013939:492959:4972604972604989301671Deferribacter desulfuricans SSM1, complete genomeflagellar M-ring protein FliF8e-43175
NC_012880:1765920:1822054182205418237631710Dickeya dadantii Ech703, complete genomeflagellar M-ring protein FliF2e-42174
NC_016514:2950860:2976412297641229780911680Enterobacter cloacae EcWSU1 chromosome, complete genomeflagellar M-ring protein5e-42172
NC_019978:625476:6317716317716333151545Halobacteroides halobius DSM 5150, complete genomeflagellar basal-body M-ring protein/flagellar hook-basal body protein FliF1e-41171
NC_009253:2615777:2628811262881126303761566Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar MS-ring protein2e-41170
NC_014562:1844268:1865581186558118673081728Pantoea vagans C9-1 chromosome, complete genomeFlagellar M-ring protein2e-41170
NC_014377:1060000:1073721107372110752741554Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar M-ring protein FliF7e-41169
NC_013592:1730505:1732230173223017339541725Dickeya dadantii Ech586, complete genomeflagellar M-ring protein FliF2e-40167
NC_008800:2695977:2731117273111727328171701Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,flagellar MS-ring protein4e-40166
NC_015224:2017781:2020849202084920225281680Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,flagellar MS-ring protein5e-40166
NC_012917:2921932:2943953294395329456771725Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeflagellar M-ring protein FliF6e-39162
NC_008340:774206:7913967913967931381743Alkalilimnicola ehrlichei MLHE-1, complete genomeflagellar M-ring protein FliF4e-39162
NC_015589:1240197:1267884126788412694431560Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeflagellar M-ring protein FliF1e-38161
NC_009138:1843998:1893501189350118951381638Herminiimonas arsenicoxydans, complete genomeflagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein1e-38161
NC_004547:1970686:1970686197068619724101725Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeflagellar M-ring protein1e-38161
NC_014355:2210884:2233748223374822353041557Candidatus Nitrospira defluvii, complete genomeflagellar M-ring protein FliF3e-38160
NC_015138:4905935:4905935490593549076411707Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeflagellar M-ring protein FliF3e-38160
NC_012912:1788308:1791406179140617931121707Dickeya zeae Ech1591, complete genomeflagellar M-ring protein FliF2e-38160
NC_014500:3023762:3051871305187130535921722Dickeya dadantii 3937 chromosome, complete genomeflagellar M-ring protein fliF4e-37156
NC_008536:435221:4352214352214369331713Solibacter usitatus Ellin6076, complete genomeflagellar M-ring protein FliF6e-36152
NC_007503:861668:8769758769758785611587Carboxydothermus hydrogenoformans Z-2901, complete genomeflagellar M-ring protein FliF8e-36152
NC_010718:1454087:1462715146271514642741560Natranaerobius thermophilus JW/NM-WN-LF, complete genomeflagellar M-ring protein FliF9e-36152
NC_013223:685628:6927666927666942801515Desulfohalobium retbaense DSM 5692, complete genomeflagellar M-ring protein FliF1e-35151
NC_013943:2431643:2444557244455724462241668Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeflagellar M-ring protein FliF2e-35150
NC_015733:4253961:4253961425396142557391779Pseudomonas putida S16 chromosome, complete genomeflagellar MS-ring protein1e-34148
NC_013851:3300278:3319557331955733212901734Allochromatium vinosum DSM 180 chromosome, complete genomeflagellar M-ring protein FliF4e-33143
NC_012440:659646:6712296712296728181590Persephonella marina EX-H1, complete genomeflagellar M-ring protein FliF3e-32140
NC_016893:43234:6509665096667901695Wigglesworthia glossinidia endosymbiont of Glossina morsitansflagellar basal-body MS-ring and collar protein4e-31136
NC_010520:2860960:2874315287431528758951581Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar M-ring protein fliF3e-31136
NC_010674:858397:8583978583978599591563Clostridium botulinum B str. Eklund 17B, complete genomeflagellar M-ring protein FliF9e-31135
NC_017297:2854934:2860865286086528624451581Clostridium botulinum F str. 230613 chromosome, complete genomefliF; flagellar M-ring protein FliF2e-30134
NC_009698:2649453:2662793266279326643731581Clostridium botulinum A str. Hall chromosome, complete genomeflagellar MS-ring protein2e-30134
NC_009697:2714668:2725866272586627274461581Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar MS-ring protein2e-30134
NC_014032:3330596:3330596333059633321941599Salinibacter ruber M8 chromosome, complete genomeflagellar M-ring protein2e-29131
NC_009617:4911595:4925973492597349275411569Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeflagellar MS-ring protein1e-29131
NC_009831:66518:8512985129868411713Shewanella sediminis HAW-EB3, complete genomeflagellar M-ring protein FliF2e-29130
NC_004344:26828:6384663846655551710Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein8e-29129
NC_007508:2277640:2277640227764022793641725Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeflagellar biosynthesis lipoprotein FliF9e-29128
NC_010723:833870:8366888366888382501563Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar M-ring protein FliF1e-28128
NC_007912:2768363:2783820278382027854901671Saccharophagus degradans 2-40, complete genomeflagellar M-ring protein3e-28127
NC_007645:4195500:4229915422991542313031389Hahella chejuensis KCTC 2396, complete genomeflagellar M-ring protein FliF2e-26120
NC_006677:435652:4487984487984502461449Gluconobacter oxydans 621H, complete genomeflagellar M-ring protein1e-25118
NC_020291:4903981:4937190493719049387611572Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeflagellar M-ring protein FliF1e-25118
NC_016012:1312352:1312352131235213138811530Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeflagellar MS-ring protein3e-25117
NC_009484:1627734:1638504163850416400661563Acidiphilium cryptum JF-5 chromosome, complete genomeflagellar M-ring protein FliF2e-24114
NC_015186:1698000:1708766170876617103281563Acidiphilium multivorum AIU301, complete genomeflagellar M-ring protein FliF2e-24114
NC_015391:2059191:2087756208775620893301575Carnobacterium sp. 17-4 chromosome, complete genomeflagellar M-ring protein3e-24113
NC_017294:1385576:1388876138887613904051530Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeflagellar MS-ring protein2e-23110
NC_015913:1422444:1422444142244414239731530Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeflagellar MS-ring protein FliF2e-23110
NC_018664:1663324:1684116168411616856691554Clostridium acidurici 9a chromosome, complete genomeflagellar MS-ring protein FliF3e-23110
NC_014376:3732547:3734301373430137359051605Clostridium saccharolyticum WM1 chromosome, complete genomeflagellar M-ring protein FliF3e-21103
NC_014652:628435:6360106360106376921683Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar m-ring protein flif5e-2099.8
NC_014721:434501:4513464513464530281683Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeflagellar m-ring protein flif1e-1998.6
NC_008593:1103293:1109668110966811112391572Clostridium novyi NT, complete genomeflagellar M-ring protein FliF1e-1998.6
NC_020911:2921925:2952096295209629539761881Octadecabacter antarcticus 307, complete genomeflagellar M-ring protein FliF1e-1998.6
NC_009850:1954969:1966540196654019682641725Arcobacter butzleri RM4018, complete genomeflagellar M-ring protein FliF3e-1893.6
NC_017187:1832045:1844748184474818464721725Arcobacter butzleri ED-1, complete genomeflagellar M-ring protein FliF8e-1892.4
NC_009633:2725128:2738092273809227396451554Alkaliphilus metalliredigens QYMF chromosome, complete genomeflagellar M-ring protein FliF3e-1790.5
NC_017192:2469667:2479712247971224814301719Arcobacter sp. L, complete genomeflagellar M-ring protein FliF8e-1582.4
NC_009092:1504363:1575039157503915767361698Shewanella loihica PV-4, complete genomeflagellar M-ring protein FliF1e-1378.6
NC_009012:574145:5793185793185808711554Clostridium thermocellum ATCC 27405, complete genomeflagellar M-ring protein FliF2e-1273.9
NC_010673:291679:3034643034643051701707Borrelia hermsii DAH, complete genomeflagellar M-ring protein FliF1e-1172
NC_008209:253663:2615182615182631401623Roseobacter denitrificans OCh 114, complete genomeflagellar M-ring protein FliF, putative1e-1172
NC_008710:277207:3027563027563044621707Borrelia turicatae 91E135, complete genomeflagellar M-ring protein FliF1e-1171.6
NC_017238:272980:2998932998933016021710Borrelia afzelii PKo chromosome, complete genomeflagellar M-ring protein FliF6e-1169.7
NC_011728:269853:3001483001483018571710Borrelia burgdorferi ZS7, complete genomeflagellar MS-ring protein6e-1169.7
NC_011244:319373:3226823226823243881707Borrelia recurrentis A1, complete genomeflagellar MS-ring protein2e-1067.4
NC_018604:1045774:1053096105309610547931698Brachyspira pilosicoli WesB complete genomeflagellar M-ring protein FliF1e-0862
NC_019908:982471:9944299944299961261698Brachyspira pilosicoli P43/6/78 chromosome, complete genomeflagellar MS-ring protein1e-0862
NC_014330:2268773:2276097227609722777851689Brachyspira pilosicoli 95/1000 chromosome, complete genomeflagellar M-ring protein FliF1e-0862
NC_018607:1803500:1813487181348718151841698Brachyspira pilosicoli B2904 chromosome, complete genomeflagellar M-ring protein FliF2e-0861.6
NC_017243:1229597:1236427123642712381301704Brachyspira intermedia PWS/A chromosome, complete genomeflagellar MS-ring protein3e-0860.8
NC_012225:787737:7988487988488004761629Brachyspira hyodysenteriae WA1, complete genomeflagellar MS-ring protein3e-0860.5
NC_013891:640784:6525096525096541521644Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeflagellar M-ring protein3e-0860.5
NC_011660:1889504:1899816189981619014681653Listeria monocytogenes HCC23 chromosome, complete genomeflagellar MS-ring protein1e-0758.9
NC_003212:721112:7430637430637447151653Listeria innocua Clip11262, complete genomeflagellar M-ring protein9e-0858.9
NC_016011:678419:6972476972476988901644Listeria ivanovii subsp. ivanovii PAM 55, complete genomeputative flagellar basal-body M-ring protein FliF8e-0858.9
NC_008555:696217:7079697079697096211653Listeria welshimeri serovar 6b str. SLCC5334, complete genomeflagellar M-ring protein FliF2e-0757.8
NC_014150:446359:4580114580114597141704Brachyspira murdochii DSM 12563 chromosome, complete genomeflagellar M-ring protein FliF3e-0757.4
NC_012488:732233:7522667522667539181653Listeria monocytogenes Clip81459, complete genomeflagellar MS-ring protein4e-0757
NC_013766:757987:7813057813057829571653Listeria monocytogenes 08-5578 chromosome, complete genomeflagellar MS-ring protein5e-0756.6
NC_013768:721897:7480097480097496611653Listeria monocytogenes 08-5923, complete genomeflagellar MS-ring protein5e-0756.6
NC_002973:730942:7582747582747599261653Listeria monocytogenes str. 4b F2365, complete genomeflagellar M-ring protein4e-0756.6
NC_009439:20545:275242752428342819Pseudomonas mendocina ymp, complete genomeYscJ/HrcJ family type III secretion apparatus lipoprotein1e-0655.5
NC_010688:3487000:350844835084483509212765Xanthomonas campestris pv. campestris, complete genomeHrcJ protein2e-0654.3
NC_014366:2513352:252556525255652526299735Gamma proteobacterium HdN1, complete genomeType III secretion pathway protein8e-0652.4