Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4517635 Kineococcus radiotolerans SRS30216, complete genome

Start: 4517635, End: 4518357, Length: 723

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family3e-1788.6
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein3e-1685.5
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family7e-1580.9
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family3e-1478.6
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family8e-1477.4
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator9e-1477
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family1e-1377
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator4e-1375.1
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR4e-1375.1
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family2e-1273.2
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator2e-1272.8
NC_008543:323773:326602326602327249648Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family3e-1272.4
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family3e-1272
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator6e-1271.2
NC_015152:2887414:289483728948372895514678Spirochaeta sp. Buddy chromosome, complete genomeGntR family transcriptional regulator6e-1271.2
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family7e-1270.9
NC_015554:4002952:401532540153254016101777Alteromonas sp. SN2 chromosome, complete genomeGntR family transcriptional regulator1e-1170.1
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR5e-1168.2
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR5e-1168.2
NC_016582:10015558:100189221001892210019551630Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator6e-1167.8
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family6e-1167.8
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator8e-1167.4
NC_008596:3404832:342173434217343422429696Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-1066.2
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator2e-1065.9
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family3e-1065.5
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein3e-1065.5
NC_017986:4374979:438945543894554390258804Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator4e-1065.1
NC_009512:1691930:170640617064061707209804Pseudomonas putida F1, complete genometranscriptional regulator, GntR family4e-1065.1
NC_011004:4183993:422052942205294221239711Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, GntR family5e-1064.7
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family6e-1064.7
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein6e-1064.3
NC_012522:5847699:584894558489455849634690Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator6e-1064.3
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator6e-1064.3
NC_018524:4564493:457843645784364579053618Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein1e-0963.5
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-0963.5
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family1e-0963.5
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0963.2
NC_015379:4426827:443682144368214437543723Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, GntR family2e-0963.2
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family2e-0962.8
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-0962.8
NC_008392:666000:681288681288681968681Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, GntR family2e-0962.8
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family3e-0962.4
NC_015145:92397:917359173592400666Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator3e-0962.4
NC_013524:392089:401901401901402647747Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, GntR family3e-0962.4
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator5e-0961.6
NC_009937:412302:415716415716416384669Azorhizobium caulinodans ORS 571, complete genomeGntR family transcriptional regulator8e-0960.8
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family7e-0960.8
NC_008380:4078670:408035540803554081065711Rhizobium leguminosarum bv. viciae 3841, complete genomeputative GntR family transcriptional regulator7e-0960.8
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family7e-0960.8
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator9e-0960.5
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family1e-0860.5
NC_014841:131308:133188133188133841654Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, GntR family1e-0860.1
NC_014119:977136:993862993862994566705Burkholderia sp. CCGE1002 chromosome chromosome 3, completetranscriptional regulator, GntR family1e-0860.1
NC_014974:1076565:108378810837881084447660Thermus scotoductus SA-01 chromosome, complete genomeGntR family transcriptional regulator1e-0860.1
NC_002754:1061851:108024710802471080885639Sulfolobus solfataricus P2, complete genomeTranscriptional regulator1e-0860.1
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator2e-0859.7
NC_010501:1868888:189460218946021895321720Pseudomonas putida W619, complete genometranscriptional regulator, GntR family2e-0859.3
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family2e-0859.3
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family3e-0858.9
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family4e-0858.5
NC_016906:3286384:328959032895903290342753Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator4e-0858.5
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family5e-0858.2
NC_015057:30743:366533665337351699Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetranscriptional regulator, GntR family7e-0857.8
NC_018681:2447871:245134424513442451982639Nocardia brasiliensis ATCC 700358 chromosome, complete genomeGntR family transcriptional regulator7e-0857.8
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator7e-0857.8
NC_015458:3390674:340150434015043402238735Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator7e-0857.8
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family9e-0857.4
NC_014815:4621552:465611546561154656822708Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family1e-0756.6
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family2e-0756.6
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family2e-0756.2
CP002207:3584000:359051735905173591182666Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator2e-0756.2
NC_014639:3584000:359051735905173591182666Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator2e-0756.2
NC_004463:2262467:226446822644682265103636Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-0756.2
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_014334:37040:521305213052822693Lactobacillus casei str. Zhang chromosome, complete genometranscriptional regulator2e-0755.8
NC_006087:28490:482774827748990714Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, GntR family3e-0755.8
NC_014410:989698:989698989698990465768Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, GntR family3e-0755.5
NC_010511:6169468:619195061919506192657708Methylobacterium sp. 4-46 chromosome, complete genome4e-0755.5
NC_013740:2218215:222773122277312228360630Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, GntR family4e-0755.1
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family4e-0755.1
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein4e-0755.1
NC_007509:832473:839275839275839937663Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, GntR family4e-0755.1
NC_019970:929666:929666929666930433768Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional regulator5e-0754.7
UCMB5137:3660165:366330036633003663956657Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator6e-0754.7
NC_008268:3418000:341808234180823418726645Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, GntR family6e-0754.3
NC_008148:1859888:190316519031651903911747Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family7e-0754.3
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family1e-0653.9
NC_013526:65495:890168901689705690Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family1e-0653.5
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-0653.1
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator2e-0653.1
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator2e-0653.1
NC_007948:3502843:352215035221503522902753Polaromonas sp. JS666, complete genometranscriptional regulator, GntR family2e-0652.8
NC_004557:2607073:262244126224412623106666Clostridium tetani E88, complete genometranscriptional regulator, gntR family2e-0652.8
NC_011750:2928990:296321029632102963872663Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional regulator CsiR2e-0652.8
NC_011601:2998326:302153730215373022199663Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator CsiR2e-0652.8
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-0652.8
NC_008260:125500:129582129582130286705Alcanivorax borkumensis SK2, complete genometranscriptional regulator, GntR family3e-0652.4
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC3e-0652.4
NC_008254:611437:6283116283116295011191Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family3e-0652.4
NC_010473:2839902:288546128854612886123663Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional dual regulator3e-0652
AP010958:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional dual regulator CsiR3e-0652
NC_010498:2847359:286928928692892869951663Escherichia coli SMS-3-5, complete genomegab operon transcriptional repressor CsiR3e-0652
AC_000091:2747520:279433027943302794992663Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional dual regulator3e-0652
NC_007384:2933625:295532129553212956001681Shigella sonnei Ss046, complete genomeputative transcriptional regulator3e-0652
CP002185:2919752:294178929417892942451663Escherichia coli W, complete genomeDNA-binding transcriptional dual regulator3e-0652
NC_000913:2746886:279369627936962794358663Escherichia coli K12, complete genomeDNA-binding transcriptional dual regulator3e-0652
NC_012759:2633949:267950826795082680170663Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional regulator CsiR3e-0652
NC_012967:2669182:269042726904272691089663Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional regulator CsiR3e-0652
NC_013353:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional dual regulator CsiR3e-0652
NC_013361:3651150:367411436741143674776663Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator CsiR3e-0652
NC_013364:3339768:335928833592883359950663Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional dual regulator CsiR3e-0652
NC_016822:3065426:308750330875033088165663Shigella sonnei 53G, complete genomeDNA-binding transcriptional regulator CsiR3e-0652
NC_008563:2946391:296554229655422966222681Escherichia coli APEC O1, complete genomeputative transcriptional regulator YgaE5e-0651.6
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein5e-0651.6
NC_011742:2863316:288287128828712883533663Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional regulator CsiR5e-0651.6
CU928160:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional dual regulator5e-0651.6
NC_011741:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional regulator CsiR5e-0651.6
NC_015976:2064387:208343820834382084115678Sphingobium sp. SYK-6, complete genomeputative GntR family transcriptional regulator4e-0651.6
NC_008786:1507139:153422415342241534952729Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, GntR family4e-0651.6
NC_009659:2849000:287099328709932871691699Janthinobacterium sp. Marseille chromosome, complete genomeGntR family transcriptional regulator7e-0650.8
NC_008595:5168941:517071151707115171400690Mycobacterium avium 104, complete genometranscriptional regulator, GntR family protein8e-0650.8
NC_014210:5683616:569274356927435693420678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family8e-0650.8
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family8e-0650.8
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein8e-0650.8