Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:3770282 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
377028237717481467lytic transglycosylase catalyticQuickGO ontologyBLASTP
37717513772218468hypothetical protein
37722393772715477CMPdCMP deaminase zinc-bindingQuickGO ontologyBLASTP
377276937741391371multicopper oxidase type 3QuickGO ontologyBLASTP
37743193774789471hypothetical protein
37747923775307516hypothetical protein
37753693775995627hypothetical protein
37767763777084309hypothetical protein
37770623777343282hypothetical proteinBLASTP
377761237800982487hypothetical proteinBLASTP
378009537813901296hypothetical proteinBLASTP
378136537835812217DEADDEAH box helicase domain-containing proteinQuickGO ontologyBLASTP
37839703784470501hypothetical protein
37845243784871348hypothetical protein
378502637863271302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
37865643787217654hypothetical proteinBLASTP
378738837891691782hypothetical proteinBLASTP
37895803790092513BLASTP
37910833791721639cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
37917183791930213hypothetical proteinBLASTP
379292837945081581cholinecarnitinebetaine transporterQuickGO ontologyBLASTP
37948743795464591hypothetical proteinBLASTP
379549337963268343-oxoadipate enol-lactonaseQuickGO ontologyBLASTP
379632337978041482aldehyde dehydrogenase acceptorQuickGO ontologyBLASTP
37978173798302486flavin reductase domain-containing proteinQuickGO ontologyBLASTP
379853037999691440succinate semialdehyde dehydrogenaseQuickGO ontologyBLASTP
379998838003713844-carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
38004043801204801GntR family transcriptional regulatorQuickGO ontologyBLASTP
38012093801772564NUDIX hydrolaseQuickGO ontologyBLASTP