Pre_GI Gene

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Host: NC_011961 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011961:891815 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
891815892588774menaquinone biosynthesis methyltransferase UbiEQuickGO ontologyBLASTP
892614893204591hypothetical proteinBLASTP
893315893434120hypothetical protein
893478894059582flavin-nucleotide-binding proteinQuickGO ontologyBLASTP
894085894489405hypothetical proteinBLASTP
894673895593921protein of unknown function DUF6 transmembraneQuickGO ontologyBLASTP
8956418966961056GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
896992897783792transcriptional regulater GntR family proteinQuickGO ontologyBLASTP
897928898926999aldolaseQuickGO ontologyBLASTP
899067899198132hypothetical protein
8992189007111494toluene-4-monooxygenase system protein AQuickGO ontologyBLASTP
900787901035249toluene-4-monooxygenase system protein BQuickGO ontologyBLASTP
901025901390366toluene-4-monooxygenase system protein CQuickGO ontologyBLASTP
901408901719312toluene-4-monooxygenase system protein DQuickGO ontologyBLASTP
9017339027401008toluene-4-monooxygenase system protein EQuickGO ontologyBLASTP
9027379037441008xylene monooxygenase electron transfer subunitQuickGO ontologyBLASTP
903815904264450hypothetical proteinBLASTP
90477890561183423-dihydroxy-23-dihydro-phenylpropionate dehydrogenaseQuickGO ontologyBLASTP
9056279067421116epoxide hydrolase 1 Microsomal epoxide hydrolaseEpoxide hydrataseQuickGO ontologyBLASTP
9067589079301173pigment production hydroxylaseQuickGO ontologyBLASTP
90794390949315514-hydroxyphenylacetate 3-monooxygenase oxygenase component 4-HPA 3-monooxygenase large component 4-HPA 3-hydroxylaseQuickGO ontologyBLASTP
9095039103608582-hydroxy-6-oxo-6-phenylhexa-24-dienoate hydrolaseQuickGO ontologyBLASTP
9103979118751479pyoverdin chromophore biosynthetic protein PvcCQuickGO ontologyBLASTP
911872912735864short chain dehydrogenaseQuickGO ontologyBLASTP
912687913187501cupin 2 conserved barrel domain proteinQuickGO ontologyBLASTP
913237914136900catechol 23-dioxygenaseQuickGO ontologyBLASTP
91418991515496634-dihydroxyphenylacetate 23-dioxygenaseQuickGO ontologyBLASTP
9152179172412025nerd domain proteinQuickGO ontologyBLASTP