Pre_GI: BLASTP Hits

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Query: NC_009439:4267356:4271694 Pseudomonas mendocina ymp, complete genome

Start: 4271694, End: 4273073, Length: 1380

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016901:2542110:2559986255998625613681383Shewanella baltica OS678 chromosome, complete genomeNa+/H+ antiporter NhaC-like protein0674
NC_009997:2585588:2600069260006926014511383Shewanella baltica OS195, complete genomeNa+/H+ antiporter NhaC0674
NC_004603:1897532:1897532189753218990161485Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein1e-106387
NC_007963:3574000:3577282357728235788351554Chromohalobacter salexigens DSM 3043, complete genomeNa+/H+ antiporter NhaC3e-63243
NC_013165:1407000:1442760144276014442021443Slackia heliotrinireducens DSM 20476, complete genomeNa+/H+ antiporter3e-58226
NC_008345:3287000:3301054330105433026101557Shewanella frigidimarina NCIMB 400, complete genomeNa+/H+ antiporter NhaC2e-57223
NC_007963:1582089:1611475161147516129891515Chromohalobacter salexigens DSM 3043, complete genomeNa+/H+ antiporter NhaC1e-53210
NC_014150:1607873:1612066161206616137181653Brachyspira murdochii DSM 12563 chromosome, complete genomeNa+/H+ antiporter NhaC-like protein3e-51202
NC_000868:269923:2931072931072947081602Pyrococcus abyssi GE5, complete genomehypothetical protein6e-47188
NC_013204:74855:9368593685953431659Eggerthella lenta DSM 2243, complete genomeNa+/H+ antiporter NhaC3e-46186
NC_014378:525717:5275905275905290981509Acetohalobium arabaticum DSM 5501 chromosome, complete genometransporter, NhaC family (TC 2.A.35)3e-46186
NC_002506:207097:2304652304652320541590Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein8e-45181
NC_012580:207025:2303922303922319811590Vibrio cholerae M66-2 chromosome II, complete sequencehypothetical protein8e-45181
NC_012583:242760:2653402653402669291590Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein8e-45181
NC_013501:1881692:1908675190867519105641890Rhodothermus marinus DSM 4252, complete genomeNa+/H+ antiporter NhaC8e-45181
NC_012563:519037:5423715423715441371767Clostridium botulinum A2 str. Kyoto, complete genomeNa+/H+ antiporter family protein8e-45181
NC_012658:482313:5055145055145072801767Clostridium botulinum Ba4 str. 657 chromosome, complete genomeNa+/H+ antiporter family protein8e-45181
NC_016446:979884:1003240100324010048201581Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein7e-45181
NC_016945:207089:2304452304452320251581Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein7e-45181
NC_012883:1421644:1422182142218214238641683Thermococcus sibiricus MM 739, complete genomeNa+/H+ antiporter, putative, NhaC family9e-44178
NC_004347:1038253:1042150104215010437301581Shewanella oneidensis MR-1, complete genomehypothetical Na+/H+ antiporter9e-44178
NC_013456:3011518:3017418301741830189411524Vibrio sp. Ex25 chromosome 1, complete genomeNa+/H+ antiporter NhaC2e-42174
NC_012029:1759291:1760593176059317622781686Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeNa+/H+ antiporter NhaC2e-41170
NC_013744:300000:3176743176743194581785Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeNa+/H+ antiporter NhaC-like protein2e-40166
NC_011529:1375920:1392845139284513945031659Thermococcus onnurineus NA1, complete genomeNhaC-type sodium/hydrogen antiporter4e-40166
NC_010519:1411347:1413975141397514155221548Haemophilus somnus 2336 chromosome, complete genomehypothetical protein4e-40166
NC_008309:842072:8438158438158453621548Haemophilus somnus 129PT, complete genomeNa(+)/H(+) antiporter5e-40166
NC_017361:930280:9321039321039335931491Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein6e-40165
NC_013922:1201456:1204912120491212066061695Natrialba magadii ATCC 43099 chromosome, complete genomeNa+/H+ antiporter NhaC-like protein7e-40165
NC_014654:2277461:2295226229522622966561431Halanaerobium sp. 'sapolanicus' chromosome, complete genomeNa+/H+ antiporter NhaC-like protein1e-39164
NC_015865:1468689:1497778149777814993011524Thermococcus sp. 4557 chromosome, complete genomeNhaC-type sodium/hydrogen antiporter6e-39162
NC_014166:2055984:2077667207766720793821716Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeNa+/H+ antiporter NhaC3e-37156
NC_014218:1163513:1163513116351311650991587Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeNa+/H+ antiporter NhaC1e-36154
NC_021066:3703725:3714412371441237158301419Raoultella ornithinolytica B6, complete genomeNa+/H+ antiporter NhaC-like protein2e-32140
NC_009699:490652:5141585141585159241767Clostridium botulinum F str. Langeland chromosome, complete genomeNa+/H+ antiporter family protein6e-25115
NC_017297:490922:5144275144275161931767Clostridium botulinum F str. 230613 chromosome, complete genomeNa+/H+ antiporter family protein6e-25115
NC_010520:496500:5175405175405193061767Clostridium botulinum A3 str. Loch Maree, complete genomeNa+/H+ antiporter family protein5e-25115
NC_009698:467500:4881704881704899361767Clostridium botulinum A str. Hall chromosome, complete genomeNa+/H+ antiporter family protein1e-24114
NC_009697:444801:4677824677824695481767Clostridium botulinum A str. ATCC 19397 chromosome, completeNa+/H+ antiporter family protein1e-24114
NC_010516:514000:5344675344675362331767Clostridium botulinum B1 str. Okra, complete genomeNa+/H+ antiporter family protein1e-24114
NC_015731:1381737:1384891138489113863151425Nitrosomonas sp. Is79A3 chromosome, complete genomeNa+/H+ antiporter NhaC2e-0860.8
NC_018604:1534074:1535271153527115367011431Brachyspira pilosicoli WesB complete genomeputative Na+/H+ antiporter2e-0860.5
NC_008344:554229:5670505670505684771428Nitrosomonas eutropha C91, complete genomeNa+/H+ antiporter NhaC3e-0757
NC_013204:929434:9532219532219545551335Eggerthella lenta DSM 2243, complete genomeNa+/H+ antiporter NhaC7e-0652.4
NC_007963:1582089:1600093160009316016011509Chromohalobacter salexigens DSM 3043, complete genomeNa+/H+ antiporter NhaC9e-0652