Pre_GI: BLASTP Hits

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Query: NC_008268:3418000:3423885 Rhodococcus sp. RHA1, complete genome

Start: 3423885, End: 3425723, Length: 1839

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012522:3224526:3224526322452632277893264Rhodococcus opacus B4, complete genomeputative serine/threonine protein kinase1e-145517
NC_012522:3224526:3240223324022332430362814Rhodococcus opacus B4, complete genomeputative LuxR family transcriptional regulator2e-145516
NC_008271:35909:5350253502567713270Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprotein kinase/ transcriptional regulator, LuxR family3e-134479
NC_012522:98567:1091781091781114962319Rhodococcus opacus B4, complete genomeputative LuxR family transcriptional regulator2e-125449
NC_007777:1170406:1178211117821111806552445Frankia sp. CcI3, complete genometranscriptional regulator, LuxR family5e-100365
NC_009142:5647737:5652066565206656544082343Saccharopolyspora erythraea NRRL 2338, complete genomeprotein kinase/transcriptional regulator, LuxR family1e-94347
NC_008268:5745620:5761830576183057645022673Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, LuxR family1e-76287
NC_008278:175500:1932821932821955912310Frankia alni ACN14a, complete genomeputative transcriptional regulator2e-76287
NC_003888:1395319:1406138140613814084802343Streptomyces coelicolor A3(2), complete genomemulti-domain regulatory protein2e-75284
NC_017186:6395435:6399989639998964021722184Amycolatopsis mediterranei S699 chromosome, complete genomeATPase5e-56219
NC_014318:6395392:6399946639994664026392694Amycolatopsis mediterranei U32 chromosome, complete genomepredicted ATPase1e-55218
NC_019950:2830682:2837062283706228404063345Mycobacterium canettii CIPT 140060008 complete genomePutative LuxR family transcriptional regulator3e-45183
NC_015848:2859145:2865525286552528688693345Mycobacterium canettii CIPT 140010059, complete genomeputative transcriptional regulatory protein4e-45183
NC_006087:2214209:2232154223215422344032250Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, LuxR family6e-44179
NC_016804:2735897:2740639274063927440523414Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative transcriptional regulatory protein, LuxR family5e-43176
NC_012207:2747599:2754045275404527574583414Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative transcriptional regulatory protein5e-43176
NC_008769:2754828:2761274276127427646873414Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative transcriptional regulatory protein (luxR-family)5e-43176
NC_002755:2788000:2792955279295527962963342Mycobacterium tuberculosis CDC1551, complete genometranscriptional regulator, LuxR family1e-42175
NC_009565:2806000:2810784281078428141973414Mycobacterium tuberculosis F11, complete genomehypothetical transcriptional regulatory protein, luxR-family1e-42175
NC_009525:2802987:2809435280943528128483414Mycobacterium tuberculosis H37Ra, complete genomeLuxR family transcriptional regulator1e-42175
NC_002945:2757821:2764268276426827676813414Mycobacterium bovis AF2122/97, complete genomeLuxR family transcriptional regulator1e-42175
NC_000962:2791019:2797467279746728008803414Mycobacterium tuberculosis H37Rv, complete genomePROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)1e-42175
NC_016943:1314500:1314500131450013177873288Blastococcus saxobsidens DD2, complete genomeMulti-domain regulatory protein3e-41170
NC_014815:2055286:2070183207018320734463264Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, winged helix family5e-40166
NC_016111:3577572:3599142359914236023393198Streptomyces cattleya NRRL 8057, complete genomeAfsR-like regulatory protein2e-38161
NC_013235:5849659:5871616587161658748973282Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, winged helix family2e-35150
NC_019673:4687289:4697284469728447004093126Saccharothrix espanaensis DSM 44229 complete genomeProtein kinase4e-35149
NC_013159:3858425:3858425385842538616073183Saccharomonospora viridis DSM 43017, complete genomepredicted ATPase4e-34146
NC_019673:3253650:3276007327600732792493243Saccharothrix espanaensis DSM 44229 complete genomeATPase-like protein1e-33145
NC_016627:3659500:3671029367102936744903462Clostridium clariflavum DSM 19732 chromosome, complete genomeputative ATPase7e-34145
NC_009485:1946000:1956702195670219596202919Bradyrhizobium sp. BTAi1 chromosome, complete genometranscriptional regulator1e-31138
NC_016582:6999074:7026400702640070305004101Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAfsR-like regulatory protein3e-31137
NC_013757:1732747:1743495174349517463262832Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, winged helix family4e-31136
NC_015379:4426827:4424076442407644268652790Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, unclassified7e-31135
NC_013757:2659930:2674458267445826773312874Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, winged helix family1e-30134
NC_014217:1352777:1360468136046813633112844Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, winged helix family7e-30132
NC_013947:460398:4835324835324866183087Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, winged helix family3e-28127
NC_014100:449541:4747094747094775672859Caulobacter segnis ATCC 21756 chromosome, complete genomewinged helix family transcriptional regulator2e-27124
NC_007510:1959883:1998966199896620015992634Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, winged helix family6e-27122
NC_015711:3697808:3715641371564137188173177Myxococcus fulvus HW-1 chromosome, complete genomeadenylate/guanylate cyclase domain-containing protein2e-24114
NC_013947:3534209:3536416353641635391752760Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family3e-24114
NC_020453:7826358:7855205785520578580932889Agromonas oligotrophica S58 DNA, complete genomeputative ATPase9e-24112
NC_011831:853433:8542868542868566252340Chloroflexus aggregans DSM 9485, complete genometranscriptional regulator, XRE family2e-23111
NC_011666:2335765:2355909235590923587662858Methylocella silvestris BL2, complete genome1e-22108
NC_018681:5490963:5520274552027455227752502Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein6e-2099.8
NC_007492:6372900:6402638640263864054902853Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, Winged helix family4e-1893.6
NC_015671:3211972:3226190322619032294293240Cellvibrio gilvus ATCC 13127 chromosome, complete genometranscriptional regulator, winged helix family2e-1687.8
NC_010512:110932:1170741170741185551482Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, winged helix family2e-1687.8
NC_009767:4819000:4837476483747648406703195Roseiflexus castenholzii DSM 13941, complete genometranscriptional regulator, SARP family1e-1585.5
NC_013947:3785332:3786080378608037888242745Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family3e-1584
NC_015379:4426827:4426827442682744283141488Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, unclassified6e-1582.8
NC_010676:3009980:3009980300998030114941515Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, winged helix family2e-1378.2
NC_015312:61752:7863778637814442808Pseudonocardia dioxanivorans CB1190 chromosome, complete genomewinged helix family transcriptional regulator1e-0965.1
NC_014100:2782000:2782139278213927849822844Caulobacter segnis ATCC 21756 chromosome, complete genomewinged helix family transcriptional regulator1e-0965.1
NC_014147:765941:769906769906770562657Moraxella catarrhalis RH4 chromosome, complete genometwo-component system nitrate/nitrite response regulator NarL3e-0964.3
NC_007204:696972:717103717103717762660Psychrobacter arcticus 273-4, complete genomenitrate/nitrite response regulator, possibly NarL5e-0963.5
NC_009142:5459819:546660054666005466854255Saccharopolyspora erythraea NRRL 2338, complete genomeprobable transcriptional regulator, LuxR family7e-0962.8
NC_008322:2716676:272338927233892724054666Shewanella sp. MR-7, complete genometwo component transcriptional regulator, LuxR family1e-0862.4
NC_008321:2649781:265542726554272656092666Shewanella sp. MR-4, complete genometwo component transcriptional regulator, LuxR family1e-0862.4
NC_007513:1764739:178662817866281786858231Synechococcus sp. CC9902, complete genometranscriptional regulator, LuxR family1e-0862
NC_015564:2870631:2901783290178329034231641Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeregulatory protein LuxR3e-0860.8
NC_006177:520055:533611533611534207597Symbiobacterium thermophilum IAM 14863, complete genometwo-component response regulator6e-0859.7
NC_014210:2597000:261792926179292618585657Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,two component transcriptional regulator, LuxR family1e-0758.9
NC_014562:2563466:257057225705722571219648Pantoea vagans C9-1 chromosome, complete genomeNitrate/nitrite response regulator protein1e-0758.9
NC_005042:165530:177893177893178174282Prochlorococcus marinus subsp. marinus str. CCMP1375, completeTranscriptional regulator, contains HTH motif1e-0758.5
NC_009664:4423829:4660121466012146629882868Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR1e-0758.5
NC_018750:3661243:3681256368125636826591404Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-0758.2
NC_013947:5682895:5684186568418656868882703Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family2e-0758.2
NC_018750:1390029:139943613994361400113678Streptomyces venezuelae ATCC 10712, complete genomeDNA-binding response regulator, LuxR family3e-0757.4
NC_008148:1567703:156992315699231570585663Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family3e-0757.4
NC_013205:526281:573068573068573763696Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,two component transcriptional regulator, LuxR family3e-0757.4
NC_017353:646195:661369661369662022654Staphylococcus lugdunensis N920143, complete genomeputative response regulator4e-0757
NC_002952:2550500:255266825526682553321654Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative response regulator4e-0757
NC_007622:2399347:240034424003442400997654Staphylococcus aureus RF122, complete genometwo-component response regulator4e-0757
NC_017338:2456000:245638824563882457041654Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeLuxR family two component transcriptional regulator4e-0757
NC_003155:7979050:798241379824137983084672Streptomyces avermitilis MA-4680, complete genometwo-component system response regulator4e-0757
NC_016941:2395502:239731123973112397964654Staphylococcus aureus subsp. aureus MSHR1132, complete genomeoxygen regulatory protein NreC4e-0757
NC_003923:2460130:246112824611282461781654Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein6e-0756.6
NC_002758:2515310:251873925187392519392654Staphylococcus aureus subsp. aureus Mu50, complete genomeresponse regulators of two-component regulatory6e-0756.6
NC_007793:2510801:251179925117992512452654Staphylococcus aureus subsp. aureus USA300, complete genometranscriptional regulator, DegU family6e-0756.6
NC_002953:2435667:244029424402942440947654Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative response regulator6e-0756.6
NC_002951:2448000:244823224482322448885654Staphylococcus aureus subsp. aureus COL, complete genometranscriptional regulatory protein DegU, putative6e-0756.6
NC_003888:1751179:176915617691561769827672Streptomyces coelicolor A3(2), complete genometwo-component response regulator6e-0756.6
NC_009782:2519379:252037725203772521030654Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein6e-0756.6
NC_002745:2446722:244772024477202448373654Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein6e-0756.6
NC_010162:7620000:762793276279327628660729Sorangium cellulosum 'So ce 56', complete genometwo-component system response regulator5e-0756.6
NC_003888:4031299:403129940312994032045747Streptomyces coelicolor A3(2), complete genometwo-component system regulator6e-0756.6
NC_016912:2329113:233011123301112330764654Staphylococcus aureus subsp. aureus VC40 chromosome, completeDegU family transcriptional regulator6e-0756.6
NC_009641:2513300:251673025167302517383654Staphylococcus aureus subsp. aureus str. Newman chromosome,transcriptional regulator DegU family protein6e-0756.6
NC_009632:2545419:254884825488482549501654Staphylococcus aureus subsp. aureus JH1 chromosome, completeresponse regulator receiver6e-0756.6
NC_010079:2510951:251194925119492512602654Staphylococcus aureus subsp. aureus USA300_TCH1516, completetranscriptional regulator6e-0756.6
NC_008610:1068429:108364410836441084273630Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),two component transcriptional regulator, LuxR family8e-0756.2
NC_009664:4423829:4655577465557746583482772Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR7e-0756.2
NC_016614:1152500:117034811703481171028681Vibrio sp. EJY3 chromosome 2, complete sequencetranscriptional regulator NarL7e-0756.2
NC_013929:8106492:811467981146798115350672Streptomyces scabiei 87.22 chromosome, complete genometwo-component response regulator7e-0756.2
NC_009921:3999040:401613540161354016815681Frankia sp. EAN1pec, complete genometwo component transcriptional regulator, LuxR family7e-0756.2
NC_016584:3826300:3836450383645038411504701Desulfosporosinus orientis DSM 765 chromosome, complete genomeATPase6e-0756.2
NC_008148:2498000:252802925280292528718690Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family9e-0755.8
NC_014210:2372813:239584423958442396497654Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,two component transcriptional regulator, LuxR family9e-0755.8
NC_018581:4992952:501621750162175016894678Gordonia sp. KTR9 chromosome, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain1e-0655.5
NC_009465:938378:950758950758951387630Candidatus Vesicomyosocius okutanii HA, complete genometwo-component system, nitrate/nitrite response regulator1e-0655.5
NC_013595:606096:619003619003619659657Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein2e-0655.1
NC_015957:8569721:859217685921768592853678Streptomyces violaceusniger Tu 4113 chromosome, complete genomeLuxR family two component transcriptional regulator2e-0655.1
NC_007335:1474455:148671214867121486987276Prochlorococcus marinus str. NATL2A, complete genomeregulatory protein, LuxR2e-0655.1
NC_010407:2406113:242079324207932421491699Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two component system response regulator1e-0655.1
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator1e-0655.1
NC_010001:109893:109893109893110531639Clostridium phytofermentans ISDg, complete genometwo component transcriptional regulator, LuxR family1e-0655.1
NC_013739:717352:720391720391721038648Conexibacter woesei DSM 14684, complete genometwo component transcriptional regulator, LuxR family2e-0654.7
NC_013595:1851226:186206318620631862716654Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein2e-0654.7
NC_021177:2185898:220579222057922206481690Streptomyces fulvissimus DSM 40593, complete genomeTwo component transcriptional regulator, LuxR family2e-0654.7
NC_016928:2411486:241248424124842413086603Staphylococcus aureus subsp. aureus M013 chromosome, completetwo-component response regulator2e-0654.7
NC_017337:2478877:248076724807672481369603Staphylococcus aureus subsp. aureus ED133 chromosome, completetwo-component response regulator2e-0654.7
NC_017342:857630:875234875234875836603Staphylococcus aureus subsp. aureus TCH60 chromosome, completeLuxR family DNA-binding response regulator2e-0654.7
NC_007644:3229:247052470525370666Moorella thermoacetica ATCC 39073, complete genometwo component transcriptional regulator, LuxR family2e-0654.7
NC_015859:1147537:116788811678881168673786Corynebacterium variabile DSM 44702 chromosome, complete genometwo-component system response regulator3e-0654.3
NC_014363:114239:142838142838143575738Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, LuxR family3e-0654.3
NC_016616:2644883:266033226603322660964633Dechlorosoma suillum PS chromosome, complete genomeresponse regulator3e-0654.3
NC_018750:1591895:160845116084511609095645Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system response regulator3e-0654.3
NC_007974:1717828:171713617171361717831696Ralstonia metallidurans CH34 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family3e-0654.3
NC_015953:6212366:624157962415796242253675Streptomyces sp. SirexAA-E chromosome, complete genomeLuxR family two component transcriptional regulator3e-0654.3
NC_012669:96966:110175110175110840666Beutenbergia cavernae DSM 12333, complete genometwo component transcriptional regulator, LuxR family3e-0654.3
NC_007795:2455468:245889824588982459500603Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein3e-0654.3
NC_013450:2463271:246426924642692464871603Staphylococcus aureus subsp. aureus ED98, complete genometranscriptional regulatory protein DegU, putative3e-0654.3
NC_016582:6811273:681717068171706817877708Streptomyces bingchenggensis BCW-1 chromosome, complete genometwo component LuxR family transcriptional regulator2e-0654.3
NC_016935:1868839:191055419105541911225672Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-0654.3
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family2e-0654.3
NC_017351:2489460:249105724910572491659603Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeoxygen regulatory protein nreC3e-0654.3
NC_017347:2511783:251278125127812513383603Staphylococcus aureus subsp. aureus T0131 chromosome, completeOxygen regulatory protein nreC3e-0654.3
NC_017343:2367177:237060623706062371208603Staphylococcus aureus subsp. aureus ECT-R 2, complete genometranscriptional regulatory protein degU (Protease production enhancerprotein)3e-0654.3
NC_017341:2544327:254532525453252545927603Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,LuxR family two component transcriptional regulator3e-0654.3
NC_015589:3241364:325205832520583252759702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver3e-0653.9
NC_008278:4023918:405790440579044058539636Frankia alni ACN14a, complete genomeputative two-component system response regulator5e-0653.5
NC_019673:3041936:305598930559893056432444Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-0653.5
NC_010718:2460893:247049824704982471184687Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LuxR family4e-0653.5
NC_015953:2059083:207917620791762079865690Streptomyces sp. SirexAA-E chromosome, complete genomeLuxR family two component transcriptional regulator4e-0653.5
NC_015953:4746983:477037547703754771031657Streptomyces sp. SirexAA-E chromosome, complete genomeLuxR family two component transcriptional regulator4e-0653.5
NC_005070:2181000:218379721837972184534738Synechococcus sp. WH 8102, complete genometwo-component response regulator4e-0653.5
NC_008819:199760:212018212018212290273Prochlorococcus marinus str. NATL1A, complete genomeBacterial regulatory protein, LuxR family4e-0653.5
NC_016887:3286436:3286436328643632882921857Nocardia cyriacigeorgica GUH-2, complete genomeLuxR family transcriptional regulator (fragment)5e-0653.1
NC_007760:3948730:396420739642073964734528Anaeromyxobacter dehalogenans 2CP-C, complete genometranscriptional regulator, LuxR family8e-0652.8
NC_015312:4658548:4661685466168546632531569Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeLuxR family transcriptional regulator8e-0652.8
NC_011593:1830500:184910518491051849974870Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,two component transcriptional regulator, LuxR family7e-0652.8
NC_017219:1830353:184889518488951849764870Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component response regulator7e-0652.8
NC_017955:2494640:2500249250024925019611713Modestobacter marinus, complete genomeLuxR family transcriptional regulator9e-0652.4
NC_009675:4281249:4281249428124942828741626Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeresponse regulator receiver protein9e-0652.4