Pre_GI: BLASTP Hits

Some Help

Query: NC_007952:495000:508531 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 508531, End: 509589, Length: 1059

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010625:670482:6729496729496740371089Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetype VI secretion protein, VC_A0111 family2e-98359
NC_015136:813701:8148068148068177632958Burkholderia sp. CCGE1001 chromosome 1, complete sequencetype VI secretion protein5e-98358
NC_013282:1256769:1263587126358712646511065Cronobacter turicensis, complete genomehypothetical protein8e-63241
NC_016514:2713834:2771045277104527720881044Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein3e-51202
NC_014306:679888:6994466994467005101065Erwinia billingiae Eb661, complete genomeconserved uncharacterized protein1e-49197
NC_015663:4129685:4146811414681141478541044Enterobacter aerogenes KCTC 2190 chromosome, complete genometype VI secretion system protein ImpH6e-45181
NC_016816:1823127:1842920184292018439691050Pantoea ananatis LMG 5342, complete genometype VI secretion system, core protein1e-44180
NC_020064:2921809:2942381294238129434511071Serratia marcescens FGI94, complete genometype VI secretion protein, VC_A0111 family7e-43174
NC_009832:3313058:3313058331305833141311074Serratia proteamaculans 568, complete genomeprotein of unknown function DUF13054e-42172
NC_007511:1780500:1799185179918518002881104Burkholderia sp. 383 chromosome 2, complete sequenceprotein of unknown function DUF13051e-40167
NC_014355:1865003:1896587189658718976511065Candidatus Nitrospira defluvii, complete genomehypothetical protein4e-2099
NC_002947:3492379:3491345349134534924151071Pseudomonas putida KT2440, complete genomehypothetical protein2e-1997.1
NC_010322:3084834:3104873310487331059431071Pseudomonas putida GB-1 chromosome, complete genometype VI secretion protein3e-1996.7
NC_009079:402891:4028914028914043691479Burkholderia mallei NCTC 10247 chromosome I, complete sequencehypothetical protein9e-1994.7
NC_008835:1827905:1830848183084818323261479Burkholderia mallei NCTC 10229 chromosome I, complete sequencehypothetical protein9e-1994.7
NC_006349:400807:4008074008074021771371Burkholderia mallei ATCC 23344 chromosome 2, complete sequencehypothetical protein9e-1994.7
NC_010084:3173757:3200421320042132015211101Burkholderia multivorans ATCC 17616 chromosome 1, completetype VI secretion protein7e-1891.7
NC_007963:2555012:255402325540232555015993Chromohalobacter salexigens DSM 3043, complete genomeprotein of unknown function DUF13051e-1791.3
NC_005126:349658:395492395492396472981Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1790.9
NC_013592:1424560:1442701144270114437141014Dickeya dadantii Ech586, complete genometype VI secretion protein, VC_A0111 family1e-1584
NC_013421:1143500:116200111620011162999999Pectobacterium wasabiae WPP163, complete genometype VI secretion protein, VC_A0111 family3e-1583.2
NC_009348:2631759:2630791263079126317951005Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein5e-1582.4
NC_007510:409843:4298524298524309521101Burkholderia sp. 383 chromosome 1, complete sequenceprotein of unknown function DUF13056e-1582
NC_008390:407315:4308534308534319531101Burkholderia cepacia AMMD chromosome 1, complete sequenceprotein of unknown function DUF13051e-1481.3
NC_011745:258727:2577142577142587631050Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-1480.5
NC_008253:257059:2570592570592581081050Escherichia coli 536, complete genomehypothetical protein2e-1480.1
NC_008570:1986466:200289620028962003894999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein3e-1479.7
NC_011751:256830:2558172558172568661050Escherichia coli UMN026 chromosome, complete genomehypothetical protein5e-1479
NC_011742:258746:2577332577332587821050Escherichia coli S88 chromosome, complete genomehypothetical protein8e-1478.2
NC_007946:258747:2577342577342587831050Escherichia coli UTI89, complete genomehypothetical protein8e-1478.2
NC_008563:258725:2577122577122587611050Escherichia coli APEC O1, complete genomehypothetical protein8e-1478.2
NC_013892:274297:2742972742972753491053Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-1376.6
NC_014228:4331327:4351521435152143525731053Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of the SST VI cluster)5e-1375.5
NC_015968:4117835:414967541496754150631957Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein3e-1272.8
NC_012779:2619871:2637980263798026390051026Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-1272.8
NC_002947:4604582:4606312460631246073281017Pseudomonas putida KT2440, complete genomehypothetical protein5e-1168.9
NC_017075:2689014:2707126270712627081961071Rubrivivax gelatinosus IL144, complete genomehypothetical protein6e-1168.9
NC_012721:1395417:1394299139429913954201122Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein2e-1066.6
NC_016626:400080:4282424282424293061065Burkholderia sp. YI23 plasmid byi_1p, complete sequencetype VI secretion protein4e-1066.2
NC_016822:267758:2667122667122677941083Shigella sonnei 53G, complete genomehypothetical protein3e-1066.2
NC_011274:1129686:1128634112863411297281095Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-1065.1
NC_018868:973379:9849389849389860801143Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-0963.9
NC_014323:4619344:4628948462894846300361089Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein3e-0963.2
NC_009656:3733913:3739524373952437405311008Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-0860.8
NC_012962:4427000:4432530443253044335611032Photorhabdus asymbiotica, complete genomehypothetical protein3e-0859.7
NC_013855:196778:2011962011962022331038Azospirillum sp. B510 plasmid pAB510a, complete sequencehypothetical protein6e-0858.9
NC_014539:3619511:3618414361841436195141101Burkholderia sp. CCGE1003 chromosome 1, complete sequencetype VI secretion protein6e-0858.9
NC_010552:592154:6143696143696154931125Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetype VI secretion protein, VC_A0111 family3e-0756.2
NC_010159:770172:772770772770773753984Yersinia pestis Angola, complete genomehypothetical protein5e-0755.8
NC_006155:751235:765363765363766346984Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein5e-0755.8
NC_008149:442168:458067458067459050984Yersinia pestis Nepal516, complete genomehypothetical protein5e-0755.8
NC_004088:4073698:4078756407875640797781023Yersinia pestis KIM, complete genomehypothetical protein5e-0755.8
NC_005810:4183297:4185903418590341869251023Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein5e-0755.8
NC_010634:732016:747123747123748106984Yersinia pseudotuberculosis PB1/+, complete genometype VI secretion protein5e-0755.8
NC_003143:524755:538864538864539847984Yersinia pestis CO92, complete genomehypothetical protein5e-0755.8
NC_017265:3861259:387634738763473877330984Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein5e-0755.8
NC_017168:561402:564008564008564991984Yersinia pestis A1122 chromosome, complete genomehypothetical protein5e-0755.8
NC_017160:520799:536698536698537681984Yersinia pestis D182038 chromosome, complete genomehypothetical protein5e-0755.8
NC_017154:520400:534509534509535492984Yersinia pestis D106004 chromosome, complete genomehypothetical protein5e-0755.8
NC_009381:3558018:356062435606243561607984Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-0755.8
NC_010465:3919572:392217839221783923161984Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein, VC_A0111 family1e-0654.7
NC_009708:3862044:386710238671023868085984Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-0654.7
NC_020211:3398281:3403209340320934042371029Serratia marcescens WW4, complete genometype VI secretion protein, TssG family2e-0653.5
NC_014029:576459:592427592427593341915Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-0653.1
NC_004578:2797493:2811942281194228129491008Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-0653.1