Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:3084834 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
308483430862911458amidaseQuickGO ontologyBLASTP
308628830875981311major facilitator superfamily transporterQuickGO ontologyBLASTP
308768230888571176amidohydrolaseQuickGO ontologyBLASTP
30916063092325720hypothetical protein
309233730935571221PAAR repeat-containing proteinQuickGO ontologyBLASTP
30935543094147594hypothetical proteinBLASTP
309416930960101842ImpA family type VI secretion-associated proteinQuickGO ontologyBLASTP
309620330973181116ADP-ribosylationcrystallin J1QuickGO ontologyBLASTP
309731530988021488hypothetical proteinBLASTP
30997103100459750hypothetical proteinBLASTP
31005243101063540type VI secretion proteinQuickGO ontologyBLASTP
310107831025801503EvpB family type VI secretion proteinQuickGO ontologyBLASTP
31026073103089483type VI secretion system lysozyme-like proteinQuickGO ontologyBLASTP
310308931049091821type VI secretion proteinQuickGO ontologyBLASTP
310487331059431071type VI secretion proteinQuickGO ontologyBLASTP
310594031085372598type VI secretion ATPaseQuickGO ontologyBLASTP