Pre_GI: BLASTP Hits

Some Help

Query: NC_007952:3283394:3310515 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3310515, End: 3310790, Length: 276

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010682:3033646:305444330544433054721279Ralstonia pickettii 12J chromosome 1, complete sequenceprotein of unknown function DUF1568e-35145
NC_010682:1763769:176743317674331767711279Ralstonia pickettii 12J chromosome 1, complete sequenceprotein of unknown function DUF1568e-35145
NC_010682:1652636:167405216740521674330279Ralstonia pickettii 12J chromosome 1, complete sequenceprotein of unknown function DUF1569e-35145
NC_010552:58294:100997100997101269273Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function DUF1561e-33141
NC_008639:2460033:246170524617052461983279Chlorobium phaeobacteroides DSM 266, complete genomeprotein of unknown function DUF1561e-1788.2
NC_010681:121647:124786124786125061276Burkholderia phytofirmans PsJN chromosome 1, complete sequenceprotein of unknown function DUF1563e-1787.4
NC_003296:673790:696181696181696453273Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein8e-1785.9
NC_015663:4347187:435152543515254351800276Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein4e-1683.6
NC_015761:1599000:160199116019911602278288Salmonella bongori NCTC 12419, complete genomehypothetical protein6e-1682.8
NC_020181:1057476:107133810713381071613276Enterobacter aerogenes EA1509E, complete genomeUncharacterized protein YaiN in in formaldehyde detoxification operon5e-1682.8
NC_011274:1544653:156079315607931561068276Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-1581.6
NC_011205:1633353:164950816495081649783276Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-1581.6
NC_011094:1683979:168954316895431689818276Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-1581.6
NC_010102:1388344:140446714044671404742276Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1581.6
NC_011080:1709612:171517617151761715451276Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein1e-1581.6
NC_011083:1761352:176692517669251767200276Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein1e-1581.6
NC_011149:1429523:148804514880451488320276Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein1e-1581.6
NC_003197:1713259:171882317188231719098276Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein1e-1581.6
NC_011294:1493849:150998715099871510262276Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-1581.6
NC_012125:2143246:215938221593822159657276Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein1e-1581.6
NC_010067:1300606:131251813125181312793276Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1581.6
NC_017046:1669995:167555916755591675834276Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-1581.6
NC_016863:1671428:167699216769921677267276Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein1e-1581.6
NC_016860:1710950:171651417165141716789276Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein1e-1581.6
NC_016857:1670112:167567616756761675951276Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein1e-1581.6
NC_016856:1723236:172880017288001729075276Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein1e-1581.6
NC_016831:1468691:147425514742551474530276Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-1581.6
NC_016810:1670112:167567616756761675951276Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1581.6
NC_006905:1726416:173198017319801732360381Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-1581.3
NC_014121:2090630:209609820960982096373276Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-1579
NC_007492:3954345:395945039594503959725276Pseudomonas fluorescens PfO-1, complete genomeProtein of unknown function DUF1564e-1476.6
NC_012559:2663747:270584927058492706121273Laribacter hongkongensis HLHK9, complete genomehypothetical protein9e-1372.4
NC_000913:2180855:218354621835462183818273Escherichia coli K12, complete genomehypothetical protein2e-1270.9
NC_004741:2169877:217257121725712172843273Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-1270.9
NC_008258:2190635:219332921933292193601273Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-1270.9
NC_009800:2225182:222787322278732228145273Escherichia coli HS, complete genometranscriptional repressor RcnR2e-1270.9
NC_002655:2925787:293145829314582931730273Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-1270.9
NC_010473:2267851:227455422745542274826273Escherichia coli str. K-12 substr. DH10B, complete genometranscriptional repressor of rcnA2e-1270.9
NC_007384:2251792:225722122572212257493273Shigella sonnei Ss046, complete genomehypothetical protein2e-1270.9
NC_004337:2185282:219104721910472191319273Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1270.9
CP002185:2347413:235411623541162354388273Escherichia coli W, complete genometranscriptional repressor2e-1270.9
NC_010468:1694729:170920117092011709473273Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF1562e-1270.9
AC_000091:2185369:218885821888582189130273Escherichia coli W3110 DNA, complete genomehypothetical protein2e-1270.9
CU928160:2239637:224506622450662245338273Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-1270.9
NC_017328:2225418:223193722319372232209273Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-1270.9
NC_016822:2341127:234655623465562346828273Shigella sonnei 53G, complete genometranscriptional repressor RcnR to maintain nickel and cobalt homeostasis2e-1270.9
NC_013008:2851342:285701328570132857285273Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranscriptional repressor of rcnA2e-1270.9
NC_012759:2069326:207602920760292076301273Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-1270.9
NC_011745:2399313:240474224047422405014273Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-1270.9
NC_011741:2239637:224506622450662245338273Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-1270.9
NC_011353:2852362:285803328580332858305273Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional repressor RcnR2e-1270.9
NC_002695:2854629:286123928612392861511273Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-1270.9
NC_011750:955451:970485970485970757273Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-1270.9
NC_009485:7827782:783334078333407833567228Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein5e-1063.2
NC_013205:1123280:116707211670721167368297Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,protein of unknown function DUF1561e-0858.5
NC_013169:1058463:108235810823581082663306Kytococcus sedentarius DSM 20547, complete genomehypothetical protein8e-0855.8
NC_008705:1557711:158687315868731587202330Mycobacterium sp. KMS, complete genomeprotein of unknown function DUF1563e-0754.3
NC_008146:1577604:158256515825651582894330Mycobacterium sp. MCS, complete genomeprotein of unknown function DUF1563e-0754.3
NC_007759:2179000:220662622066262207021396Syntrophus aciditrophicus SB, complete genomehypothetical cytosolic protein2e-0754.3
NC_015172:1255956:126606912660691266359291Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeprotein of unknown function DUF1565e-0753.1
NC_009077:4671417:469585746958574696186330Mycobacterium sp. JLS, complete genomeprotein of unknown function DUF1561e-0652
NC_014378:131810:135132135132135404273Acetohalobium arabaticum DSM 5501 chromosome, complete genomeprotein of unknown function DUF1562e-0651.2
NC_014377:1298806:131473113147311315018288Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein of unknown function DUF1562e-0651.2
NC_014388:55903:600956009560430336Butyrivibrio proteoclasticus B316 chromosome 2, complete genomehypothetical protein2e-0651.2
NC_015850:110364:154058154058154327270Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein4e-0650.4
NC_004369:437594:439624439624439950327Corynebacterium efficiens YS-314, complete genomehypothetical protein3e-0650.4
NC_011830:3786173:380770038077003807978279Desulfitobacterium hafniense DCB-2, complete genomeprotein of unknown function DUF1563e-0650.4
NC_018515:989616:992856992856993137282Desulfosporosinus meridiei DSM 13257 chromosome, complete genomehypothetical protein5e-0649.7
NC_013441:2761459:277580727758072776136330Gordonia bronchialis DSM 43247, complete genomeprotein of unknown function DUF1565e-0649.7
NC_013441:4539035:454119445411944541541348Gordonia bronchialis DSM 43247, complete genomeprotein of unknown function DUF1566e-0649.7
NC_016047:2658000:267363226736322673964333Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein8e-0649.3
NC_013895:605488:624665624665625111447Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein9e-0648.9