Pre_GI Gene

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Host: NC_011094 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011094:1683979 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
168397916853221344hypothetical proteinBLASTP
16856151686538924LysR substrate binding domain-containing proteinQuickGO ontologyBLASTP
168659916882061608methyl-accepting chemotaxis protein IIIQuickGO ontologyBLASTP
16882231688438216hypothetical proteinBLASTP
168839316895111119S-hydroxymethylglutathione dehydrogenaseclass III alcohol dehydrogenaseQuickGO ontologyBLASTP
16895431689818276hypothetical proteinBLASTP
16899621690096135hypothetical protein
16908721691588717hypothetical proteinBLASTP
169201416932401227secreted effector proteinQuickGO ontologyBLASTP
16933611693705345cyanate transportQuickGO ontologyBLASTP
16946311695392762periplasmic binding proteinQuickGO ontologyBLASTP
16953991696046648ABC transporter permeaseQuickGO ontologyBLASTP
16960711696802732ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
16967991697479681amino acid ABC transporterQuickGO ontologyBLASTP
169761616991661551hypothetical proteinBLASTP
16996301700292663type 12 methyltransferaseQuickGO ontologyBLASTP
17005631701093531cytochrome b561QuickGO ontologyBLASTP
17012101702010801hypothetical proteinBLASTP
170207417059943921ATP-dependent RNA helicase HrpAQuickGO ontologyBLASTP
17061771706782606azoreductaseQuickGO ontologyBLASTP
17067791707228450glutathione-dependent formaldehyde-activating GFAQuickGO ontologyBLASTP
17073721707695324hypothetical proteinBLASTP