Pre_GI: BLASTP Hits

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Query: NC_007347:1:6870 Ralstonia eutropha JMP134 chromosome 1, complete sequence

Start: 6870, End: 7844, Length: 975

Host Lineage: Cupriavidus pinatubonensis; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is found in both soil and water and has great potential for use in bioremediation as it is capable of degrading a large list of pollutants including chlorinated aromatic compounds. The bacterium can utilize hydrogen, carbon dioxide, as well as organic compounds for growth and is a model organism for hydrogen oxidation as it can grow on hydrogen as the sole energy source. It was originally isolated due to its ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid, which is due to the degradative functions being encoded on a plasmid (pJP4). Metabolically versatile bacterium. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012691:779826:7885707885707896011032Tolumonas auensis DSM 9187, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-58226
NC_009659:892272:9039629039629049751014Janthinobacterium sp. Marseille chromosome, complete genomeRNA-directed DNA polymerase1e-56220
NC_015496:3256372:3267584326758432686031020Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA-directed DNA polymerase3e-54212
NC_010334:609636:620220620220621074855Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-46186
NC_017191:3901914:3912193391219339139561764Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA-directed DNA polymerase2e-37156
NC_017188:3900951:3910501391050139122641764Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA-directed DNA polymerase2e-37156
NC_011750:4307166:4329863432986343310261164Escherichia coli IAI39 chromosome, complete genomeputative retron-type reverse transcriptase3e-37155
NC_011601:4036590:406150440615044062463960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeRNA-directed DNA polymerase9e-37154
NC_002939:1480474:1491977149197714931191143Geobacter sulfurreducens PCA, complete genomeRNA-directed DNA polymerase2e-30133
NC_021066:3201500:321332732133273214196870Raoultella ornithinolytica B6, complete genomehypothetical protein2e-29130
NC_013406:303218:3125503125503142201671Paenibacillus sp. Y412MC10 chromosome, complete genomeRNA-directed DNA polymerase5e-29128
NC_003911:1078949:109420510942051095173969Silicibacter pomeroyi DSS-3, complete genomeRNA-dependent DNA polymerase, putative6e-29128
NC_012660:2045398:2084638208463820857861149Pseudomonas fluorescens SBW25 chromosome, complete genomeputative RNA-directed DNA polymerase2e-28126
NC_020304:3029243:303402230340223034798777Desulfocapsa sulfexigens DSM 10523, complete genomeRetron-type reverse transcriptase2e-28126
NC_009973:178000:2176542176542194081755Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeRNA-directed DNA polymerase4e-28125
NC_015856:3059737:3068580306858030697581179Collimonas fungivorans Ter331 chromosome, complete genomeretron reverse transcriptase8e-28124
NC_011883:2826000:2832835283283528346191785Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,RNA-directed DNA polymerase1e-27124
NC_013194:634039:6422706422706439851716Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeRibonuclease H6e-27121
NC_016026:2082500:2097240209724020990481809Micavibrio aeruginosavorus ARL-13 chromosome, complete genomereverse transcriptase family protein3e-26119
NC_010688:673454:6822916822916839851695Xanthomonas campestris pv. campestris, complete genomeRNA-directed DNA polymerase5e-26118
NC_013194:1955582:1969326196932619707621437Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein7e-26118
NC_012918:928903:9532789532789544111134Geobacter sp. M21 chromosome, complete genomeRNA-directed DNA polymerase5e-25115
NC_015663:1356982:1366981136698113679971017Enterobacter aerogenes KCTC 2190 chromosome, complete genomeRNA-directed DNA polymerase2e-24113
NC_015510:4674774:4680972468097246832302259Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeRNA-directed DNA polymerase2e-24113
NC_007645:6858465:6858465685846568597991335Hahella chejuensis KCTC 2396, complete genomeRetron-type reverse transcriptase2e-24113
NC_006513:286549:2939752939752958941920Azoarcus sp. EbN1, complete genomeprobable RNA-directed DNA polymerase2e-24113
NC_007606:3784847:380768838076883808197510Shigella dysenteriae Sd197, complete genomeputative RNA-directed DNA polymerase, msDNA specific3e-24112
NC_015164:2473496:2477601247760124790611461Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase3e-24112
NC_015635:5222000:523243052324305233401972Microlunatus phosphovorus NM-1, complete genomeputative RNA-directed DNA polymerase1e-23110
NC_012108:2159230:217027321702732171157885Desulfobacterium autotrophicum HRM2, complete genomeRNA-directed DNA polymerase (retron-type reverse transcriptase)2e-23110
NC_012947:2898179:290244829024482903410963Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRNA-directed DNA polymerase2e-23109
NC_014837:33014:4546245462464751014Pantoea sp. At-9b chromosome, complete genomeRNA-directed DNA polymerase5e-22105
NC_007963:1370903:1378303137830313793341032Chromohalobacter salexigens DSM 3043, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-21103
NC_010334:609636:6242056242056253471143Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase4e-21102
NC_012880:3982383:399147739914773992475999Dickeya dadantii Ech703, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-21102
NC_015976:2900891:291120929112092912144936Sphingobium sp. SYK-6, complete genomeputative RNA-directed DNA polymerase7e-21101
NC_008786:1298817:1309683130968313108311149Verminephrobacter eiseniae EF01-2, complete genomeRNA-directed DNA polymerase2e-2099.8
NC_008570:2216736:224228322422832243191909Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative RNA-dependent DNA polymerase4e-2099.4
NC_007086:2887875:2939736293973629409231188Xanthomonas campestris pv. campestris str. 8004, complete genomeRNA-directed DNA polymerase4e-1995.5
NC_011206:262844:277816277816278763948Acidithiobacillus ferrooxidans ATCC 53993, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)5e-1995.5
NC_016818:1795576:1804158180415818059991842Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completereverse transcriptase1e-1894.4
NC_010501:3987615:4002391400239140035151125Pseudomonas putida W619, complete genomeRNA-directed DNA polymerase (reverse transcriptase)3e-1892.8
NC_013456:2984491:298688029868802987845966Vibrio sp. Ex25 chromosome 1, complete genomeputative reverse transcriptase4e-1892.4
NC_020418:2868000:2883180288318028849131734Morganella morganii subsp. morganii KT, complete genomehypothetical protein4e-1892.4
NC_013851:3142182:314937531493753150307933Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein4e-1892.4
NC_016620:781995:784689784689785654966Bacteriovorax marinus SJ, complete genomereverse transcriptase3e-1789.7
NC_013440:1190832:1204684120468412063901707Haliangium ochraceum DSM 14365, complete genomeRibonuclease H3e-1789.4
NC_002505:2537655:254964225496422550613972Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeRNA-directed DNA polymerase2e-1686.7
NC_009457:2095366:210287421028742103845972Vibrio cholerae O395 chromosome 2, complete sequenceRNA-directed DNA polymerase2e-1686.7
NC_012578:2479150:248665824866582487629972Vibrio cholerae M66-2 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1686.7
NC_012582:2626786:263429426342942635265972Vibrio cholerae O395 chromosome chromosome I, complete sequenceRNA-directed DNA polymerase2e-1686.7
NC_012668:1036000:104405310440531045024972Vibrio cholerae MJ-1236 chromosome 1, complete sequencereverse transcriptase2e-1686.7
NC_016445:2012294:201979920197992020770972Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeRNA-directed DNA polymerase2e-1686.7
NC_016944:2588435:259596425959642596911948Vibrio cholerae IEC224 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1686.7
NC_012125:2826624:284537128453712846330960Salmonella enterica subsp. enterica serovar Paratyphi C strainreverse transcriptase-like protein4e-1685.5
NC_006905:2857699:286350128635012864460960Salmonella enterica subsp. enterica serovar Choleraesuis strreverse transcriptase-like protein4e-1685.5
NC_013421:1505176:151274715127471513718972Pectobacterium wasabiae WPP163, complete genomeretron reverse transcriptase6e-1685.1
NC_008781:1426285:143612114361211436630510Polaromonas naphthalenivorans CJ2, complete genomeretron reverse transcriptase2e-1583.6
NC_014323:3292082:3299680329968033007141035Herbaspirillum seropedicae SmR1 chromosome, complete genomeretron reverse transcriptase7e-1478.2
NC_013889:1514799:1529559152955915307431185Thioalkalivibrio sp. K90mix chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1376.3
NC_010338:4530403:454094645409464541869924Caulobacter sp. K31, complete genomehypothetical protein5e-1375.5
NC_014910:242845:2767302767302777581029Alicycliphilus denitrificans BC chromosome, complete genomeretron reverse transcriptase6e-1375.1
NC_020260:603796:623334623334624089756Cronobacter sakazakii Sp291, complete genomeRNA-directed DNA polymerase3e-1272.8
NC_012880:2778795:278747227874722788422951Dickeya dadantii Ech703, complete genomereverse transcriptase7e-1271.6
NC_018012:1789028:180004918000491801002954Thiocystis violascens DSM 198 chromosome, complete genomeRetron-type reverse transcriptase9e-1271.2
NC_010688:3030873:306024630602463061202957Xanthomonas campestris pv. campestris, complete genomeputative reverse transcriptase2e-1170.1
NC_004578:4432983:4443121444312144443021182Pseudomonas syringae pv. tomato str. DC3000, complete genomeretron reverse transcriptase3e-1169.7
NC_011751:2327014:2339420233942023405201101Escherichia coli UMN026 chromosome, complete genomeputative Retron-type reverse transcriptase2e-1067
NC_017075:1674758:169370016937001694443744Rubrivivax gelatinosus IL144, complete genomeputative RNA-directed DNA polymerase2e-1066.6
NC_018012:1274500:128271112827111283664954Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein4e-1065.9
NC_008463:632869:6405816405816422661686Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative reverse transcriptase8e-1064.7
NC_014655:17641:2888228882303301449Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)9e-1064.7
NC_009438:3019552:3031547303154730326981152Shewanella putrefaciens CN-32 chromosome, complete genomeretron-type reverse transcriptase2e-0963.5
NC_014562:983398:997923997923998909987Pantoea vagans C9-1 chromosome, complete genomehypothetical protein4e-0962.4
NC_019978:1477724:1479685147968514809741290Halobacteroides halobius DSM 5150, complete genomeRetron-type reverse transcriptase5e-0962
NC_019978:1477724:1477724147772414790131290Halobacteroides halobius DSM 5150, complete genomeRetron-type reverse transcriptase5e-0962
NC_004193:79588:8221182211834701260Oceanobacillus iheyensis HTE831, complete genomerecombinase for Bh.Int6e-0962
NC_016935:1636278:1636278163627816376691392Paenibacillus mucilaginosus 3016 chromosome, complete genomeRNA-directed DNA polymerase7e-0961.6
NC_008313:2685531:270267527026752703667993Ralstonia eutropha H16 chromosome 1, complete sequencereverse transcriptase (RNA-dependent DNA polymerase)7e-0961.6
NC_013959:83992:922959229593173879Sideroxydans lithotrophicus ES-1 chromosome, complete genomeputative reverse transcriptase9e-0961.2
NC_002516:776787:785969785969786925957Pseudomonas aeruginosa PAO1, complete genomehypothetical protein9e-0961.2
NC_013385:1064188:1080741108074110820811341Ammonifex degensii KC4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-0860.8
NC_019897:128610:1464991464991478901392Thermobacillus composti KWC4 chromosome, complete genomeRetron-type reverse transcriptase1e-0860.8
NC_019897:128610:1414831414831428741392Thermobacillus composti KWC4 chromosome, complete genomeRetron-type reverse transcriptase3e-0859.7
NC_013411:3201331:3211428321142832126901263Geobacillus sp. Y412MC61, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)5e-0858.9
NC_014915:3207300:3217397321739732186591263Geobacillus sp. Y412MC52 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)5e-0858.9
NC_010609:1077453:1088145108814510895271383Lactobacillus reuteri JCM 1112, complete genomereverse transcriptase/maturase7e-0858.5
NC_015697:742500:7537557537557551371383Lactobacillus reuteri SD2112 chromosome, complete genomeRNA-directed DNA polymerase6e-0858.5
NC_015697:116000:1254021254021267841383Lactobacillus reuteri SD2112 chromosome, complete genomeRNA-directed DNA polymerase6e-0858.5
NC_015697:256000:2619622619622632061245Lactobacillus reuteri SD2112 chromosome, complete genomeRNA-directed DNA polymerase8e-0858.2
NC_014394:993465:1006372100637210080421671Gallionella capsiferriformans ES-2 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)9e-0858.2
NC_002570:126500:1307001307001319561257Bacillus halodurans C-125, complete genometransposase (11)9e-0858.2
NC_016593:1713000:1726122172612217273811260Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completereverse transcriptase (RNA-dependent DNA polymerase)1e-0757.8
NC_016593:416661:4367304367304379891260Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completereverse transcriptase (RNA-dependent DNA polymerase)1e-0757.8
NC_014219:2875051:2892888289288828941561269Bacillus selenitireducens MLS10 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-0757.8
NC_014219:2253023:2259161225916122604291269Bacillus selenitireducens MLS10 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-0757.8
NC_014219:894829:9021689021689034361269Bacillus selenitireducens MLS10 chromosome, complete genome9e-0857.8
NC_014219:2491021:2497495249749524986931199Bacillus selenitireducens MLS10 chromosome, complete genome1e-0757.4
NC_015697:1480552:1486760148676014881421383Lactobacillus reuteri SD2112 chromosome, complete genomeRNA-directed DNA polymerase2e-0757.4
NC_005139:1784000:1817712181771218188571146Vibrio vulnificus YJ016 chromosome I, complete sequenceretron-type reverse transcriptase2e-0757
NC_019970:510632:5207095207095221151407Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeRetron-type reverse transcriptase3e-0756.6
NC_019970:2551607:2574597257459725760031407Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeRetron-type reverse transcriptase3e-0756.6
NC_019970:2080419:2095698209569820971041407Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeRetron-type reverse transcriptase3e-0756.6
NC_014538:187747:1949691949691963811413Thermoanaerobacter sp. X513 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-0756.2
NC_010320:143109:1551031551031565151413Thermoanaerobacter sp. X514 chromosome, complete genomeRNA-directed DNA polymerase3e-0756.2
NC_016614:1543333:1543333154333315448051473Vibrio sp. EJY3 chromosome 2, complete sequenceRNA-directed DNA polymerase3e-0756.2
NC_015164:2961906:2984079298407929854161338Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0755.8
NC_015555:49842:4843948439498451407Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeRNA-directed DNA polymerase (Reverse transcriptase)4e-0755.8
NC_010718:1454087:1459727145972714611541428Natranaerobius thermophilus JW/NM-WN-LF, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)6e-0755.5
NC_020291:5641444:5645748564574856471061359Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeretron-type reverse transcriptase8e-0755.1
NC_013921:1977444:1977444197744419788561413Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0755.1
NC_013921:2293411:2294928229492822963401413Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0755.1
NC_013921:1396500:1396798139679813982101413Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0755.1
NC_015958:677500:6866716866716880831413Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeRNA-directed DNA polymerase7e-0755.1
NC_013921:1396500:1400425140042514018371413Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0755.1
NC_013921:80856:1000881000881015001413Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0755.1
NC_015942:3147514:3152957315295731546481692Acidithiobacillus ferrivorans SS3 chromosome, complete genomeRNA-directed DNA polymerase1e-0654.3
NC_004116:1234712:1244650124465012459271278Streptococcus agalactiae 2603V/R, complete genomeGBSi1, group II intron, maturase1e-0654.3
NC_009434:695582:7563407563407578451506Pseudomonas stutzeri A1501, complete genomeputative reverse transcriptase-maturase-transposase2e-0653.9
NC_009434:3611738:3671821367182136733261506Pseudomonas stutzeri A1501, complete genomegroup II intron-encoding maturase2e-0653.9
NC_018645:3029785:3047408304740830487481341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase2e-0653.9
NC_018645:2390032:2393152239315223944921341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase2e-0653.9
NC_018645:2390032:2395599239559923969391341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase2e-0653.9
NC_018645:2390032:2397530239753023988701341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase2e-0653.9
NC_018645:2390032:2405637240563724069771341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase2e-0653.9
NC_018645:2390032:2399461239946124008011341Desulfobacula toluolica Tol2, complete genomeRNA-directed DNA polymerase1e-0653.9
NC_019902:2372097:2380328238032823815751248Thioalkalivibrio nitratireducens DSM 14787, complete genomeRetron-type reverse transcriptase2e-0653.5
NC_010321:2276000:2283171228317122845831413Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeRNA-directed DNA polymerase2e-0653.5
NC_002950:2068500:2069615206961520727103096Porphyromonas gingivalis W83, complete genomeCRISPR-associated protein Cas12e-0653.5
NC_010321:2276000:228183622818362282342507Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeretron-type reverse transcriptase-like protein2e-0653.5
NC_013961:73037:834488344884434987Erwinia amylovora, complete genomeputative retron reverse transcriptase2e-0653.5
NC_010981:242500:2849612849612863041344Wolbachia pipientis, complete genomeputative reverse transcriptase2e-0653.5
NC_015600:1161640:1166985116698511686431659Streptococcus pasteurianus ATCC 43144, complete genomereverse transcriptase3e-0653.1
NC_014964:923681:9315429315429329541413Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeRNA-directed DNA polymerase3e-0653.1
NC_014964:35862:4562345623470351413Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeRNA-directed DNA polymerase3e-0653.1
NC_010321:35855:4561645616470281413Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeRNA-directed DNA polymerase3e-0653.1
NC_010729:2147268:2149419214941921517072289Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein5e-0652.4
NC_010718:2513917:2535266253526625365341269Natranaerobius thermophilus JW/NM-WN-LF, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0651.6
NC_010718:1959517:1966127196612719673951269Natranaerobius thermophilus JW/NM-WN-LF, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)7e-0651.6