Pre_GI Gene

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Host: NC_016944 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016944:2588435 Vibrio cholerae IEC224 chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
258843525898471413glutamate synthase subunit betaQuickGO ontologyBLASTP
25900342590468435hypothetical proteinBLASTP
259055625912516965-methylthioadenosineS-adenosylhomocysteine nucleosidaseQuickGO ontologyBLASTP
25912642592217954adenosylcobinamide-phosphate synthaseQuickGO ontologyBLASTP
25922182593048831vitamin B12 transport system substrate-binding proteinQuickGO ontologyBLASTP
25931312593751621hypothetical proteinBLASTP
25939032594763861LysR family transcriptional regulatorQuickGO ontologyBLASTP
25946932595478786hypothetical proteinBLASTP
25959642596911948RNA-directed DNA polymeraseQuickGO ontologyBLASTP
259691225985341623hypothetical proteinBLASTP
25985472599164618hypothetical proteinBLASTP
25992692599586318hypothetical proteinBLASTP
25997752600257483hypothetical proteinBLASTP
260034726035773231carbamoyl phosphate synthase large subunitQuickGO ontologyBLASTP
260359426047331140carbamoyl phosphate synthase small subunitQuickGO ontologyBLASTP
26050002605128129hypothetical proteinBLASTP
26052162606025810dihydrodipicolinate reductaseQuickGO ontologyBLASTP
26061402606538399mutator MutT proteinQuickGO ontologyBLASTP
260668826093992712preprotein translocase subunit SecAQuickGO ontologyBLASTP
26097532610226474hypothetical proteinBLASTP
26103312611248918UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylaseQuickGO ontologyBLASTP