Pre_GI Gene

Some Help

Host: NC_009438 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009438:3019552 Shewanella putrefaciens CN-32 chromosome, complete genome

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30195523020472921putative CheW proteinQuickGO ontologyBLASTP
30206773021384708flagellar basal body P-ring biosynthesis protein FlgAQuickGO ontologyBLASTP
30214583021781324anti-sigma-28 factor FlgMQuickGO ontologyBLASTP
30217843022209426FlgN family proteinQuickGO ontologyBLASTP
30225663023015450hypothetical proteinBLASTP
30230123023644633hypothetical proteinBLASTP
302392830250941167hypothetical proteinBLASTP
30254363026299864hypothetical proteinBLASTP
30264893026860372hypothetical protein
30268603027180321hypothetical protein
302717330290951923bacteriophage replication gene AQuickGO ontologyBLASTP
302917930314132235hypothetical proteinBLASTP
303154730326981152retron-type reverse transcriptaseQuickGO ontologyBLASTP
303320130345321332phage integrase family proteinQuickGO ontologyBLASTP
303476630360551290hypothetical proteinBLASTP
30360523036345294hypothetical proteinBLASTP
30363943037020627putative sugar nucleotidyltransferaseQuickGO ontologyBLASTP
30370173037616600HAD family hydrolaseQuickGO ontologyBLASTP
30376263038366741type 12 methyltransferaseQuickGO ontologyBLASTP
30383823039227846hypothetical proteinBLASTP
303922030404101191hypothetical proteinBLASTP
304038930414441056acyl-protein synthetase LuxEQuickGO ontologyBLASTP
304144130428021362AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP