Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:1036000 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
103623110373701140carbamoyl phosphate synthase small subunitQuickGO ontologyBLASTP
103738710406173231carbamoyl phosphate synthase large subunitQuickGO ontologyBLASTP
10407071041189483hypothetical proteinBLASTP
104243010440521623ATP binding proteinQuickGO ontologyBLASTP
10440531045024972reverse transcriptaseQuickGO ontologyBLASTP
10454861046271786hypothetical proteinBLASTP
10462011047061861LysR family transcriptional regulatorQuickGO ontologyBLASTP
10472131047833621membrane proteinQuickGO ontologyBLASTP
10479161048746831vitamin B12 ABC transporter B12-binding component BtuFQuickGO ontologyBLASTP
10487471049700954adenosylcobinamide-phosphate synthaseQuickGO ontologyBLASTP
104971310504086965-methylthioadenosineS-adenosylhomocysteine nucleosidaseQuickGO ontologyBLASTP
10504961050930435hypothetical proteinBLASTP
105111710525291413glutamate synthase subunit betaQuickGO ontologyBLASTP
105254810570114464glutamate synthase subunit alphaQuickGO ontologyBLASTP