Pre_GI: BLASTP Hits

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Query: NC_005126:949226:968992 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 968992, End: 969885, Length: 894

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:869295:883460883460884302843Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iid component (eiid-aga (n-acetylgalactosamine-permease iid component) (phosphotransferas enzyme ii, d comp3e-143507
CP002185:3475991:349917434991743500052879Escherichia coli W, complete genomeN-acetylgalactosamine-specific IID component1e-97356
NC_012967:3191319:321439832143983215276879Escherichia coli B str. REL606 chromosome, complete genomePTS system, N-acetylgalactosamine-specific IID component1e-97356
NC_004337:3249791:327202832720283272837810Shigella flexneri 2a str. 301, complete genomeputative transport enzyme subunit1e-94346
NC_017328:3289853:3311322331132233127791458Shigella flexneri 2002017 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IID6e-68257
NC_010067:1116148:112641511264151127305891Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-62237
NC_005139:518760:527148527148528032885Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID2e-59229
NC_011294:4604283:462884346288434629679837Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit D3e-51202
NC_016023:875416:883779883779884585807Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID7e-49194
NC_014376:4369666:437043543704354371226792Clostridium saccharolyticum WM1 chromosome, complete genomePTS system mannose/fructose/sorbose family IID component3e-48192
NC_008530:1775841:178007817800781781007930Lactobacillus gasseri ATCC 33323, complete genomemannose-specific PTS system component IID3e-46185
NC_013504:1648551:165526816552681656197930Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probably mannose specific3e-46185
NC_005362:1870620:187627718762771877206930Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID probable mannose specific1e-45183
NC_015975:1936504:195040519504051951319915Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS family mannose/fructose/sorbose porter component IID3e-44179
NC_015602:1339067:134426113442611345181921Lactobacillus kefiranofaciens ZW3 chromosome, complete genomePTS system, mannose-specific IID component3e-44178
NC_018528:1681060:168733116873311688251921Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannose family transporter subunit IID6e-44177
NC_010723:1379256:139967813996781400622945Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IID component7e-44177
NC_016818:3148000:315008931500893150931843Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IID9e-44177
NC_006814:403723:441344441344442282939Lactobacillus acidophilus NCFM, complete genomemannose-specific PTS system component IID9e-44177
NC_008261:967973:970981970981971892912Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IID component2e-43176
NC_014106:419511:452561452561453481921Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IID component2e-43176
NC_015061:3147691:314955331495533150395843Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IID subunit1e-43176
NC_017047:3212000:321415532141553214997843Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IID1e-43176
NC_011660:2509362:251640625164062517317912Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IID4e-43175
NC_012880:2399205:240318524031852404024840Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IID subunit4e-43175
NC_014724:439594:477107477107478027921Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IID component2e-42172
NC_015214:437733:476722476722477642921Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IID component2e-42172
NC_009617:4436837:445046144504614451282822Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID8e-42171
NC_013192:469771:483533483533484450918Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit9e-41167
NC_013171:228356:228356228356229294939Anaerococcus prevotii DSM 20548, complete genomePTS system mannose/fructose/sorbose family IID component3e-39162
NC_013192:2434664:245197524519752452808834Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit3e-39162
NC_009089:581655:583393583393584232840Clostridium difficile 630, complete genomePTS system, IId component4e-38158
NC_013198:394000:4184674184674201551689Lactobacillus rhamnosus GG, complete genomePTS system, mannose-specific IICD component5e-37154
NC_009442:1158268:116443711644371165252816Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID6e-37154
NC_015389:1977736:200684920068492007703855Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family6e-35148
NC_015519:270637:287720287720288547828Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID4e-34145
NC_014334:2696000:2706521270652127082151695Lactobacillus casei str. Zhang chromosome, complete genomePTS system mannose-specific transporter subunit IICD5e-33141
NC_015425:841754:855681855681856496816Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC2e-32140
NC_010380:124655:147184147184147999816Streptococcus pneumoniae Hungary19A-6, complete genomePTS system, IID component1e-32140
NC_008526:343445:3656743656743672721599Lactobacillus casei ATCC 334, complete genomeMannose-specific PTS system component IICD6e-32138
NC_004631:3841975:386377538637753864632858Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein1e-31137
NC_003198:3855157:387828538782853879142858Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein1e-31137
NC_009792:4693152:470986447098644710724861Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-31136
NC_015424:2357600:237836123783612379137777Aeromonas veronii B565 chromosome, complete genomePTS system, IID component4e-31135
NC_013199:392450:412726412726413574849Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose/fructose/sorbose IID component4e-31135
NC_016612:2902628:292990929299092930757849Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID3e-31135
NC_015389:1782825:179819117981911799054864Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family3e-31135
NC_016023:1769925:178811317881131788934822Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID5e-31134
NC_011134:1222739:122454512245451225333789Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemannose permease IID component ManZ3e-29129
NC_020063:4653422:466958146695814670423843Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID1e-24113
NC_008563:3888232:389622338962233897125903Escherichia coli APEC O1, complete genomehypothetical protein8e-24110
NC_011742:3799788:381094738109473811873927Escherichia coli S88 chromosome, complete genomephosphotransferase system enzyme IID8e-24110
NC_011149:4474012:449142044914204492292873Salmonella enterica subsp. enterica serovar Agona str. SL483,fructose permease iid component7e-23107
NC_014377:1897857:190925419092541910114861Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system IID component, Man family (TC 4.A.6)1e-21103
NC_007946:3855445:386362838636283864338711Escherichia coli UTI89, complete genomeputative phosphotransferase system protein1e-1997.4
NC_015389:809474:817609817609818496888Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family4e-1478.6
NC_014758:1489761:148976114897611490471711Calditerrivibrio nitroreducens DSM 19672 chromosome, completepts system mannose/fructose/sorbose family iid component9e-0961.2