Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6108448 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6108448, End: 6109113, Length: 666

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:3874844:390377339037733904372600Pseudomonas poae RE*1-1-14, complete genomeGntR family transcriptional regulator3e-98357
NC_006350:1938631:197258619725861973254669Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family transcriptional regulator8e-71266
NC_012660:1804610:183445618344561835124669Pseudomonas fluorescens SBW25 chromosome, complete genomeputative GntR family regulatory protein1e-25116
NC_004129:4993974:499868849986884999341654Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family2e-25115
NC_015458:2441435:246138524613852462053669Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator3e-2098.2
NC_009668:46010:612776127761927651Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceGntR family transcriptional regulator7e-2097.1
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family3e-1685.1
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family3e-1582
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family6e-1580.9
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator2e-1479.7
NC_016803:3502749:351406835140683514757690Desulfovibrio desulfuricans ND132 chromosome, complete genomeGntR family transcriptional regulator1e-1479.7
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family1e-1376.6
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family5e-1374.7
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein8e-1373.9
NC_007348:752692:758795758795759571777Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein GntR, HTH:GntR, C-terminal1e-1273.6
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family1e-1273.6
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family7e-1270.9
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-1169.7
NC_008254:611437:6283116283116295011191Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family3e-1168.6
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family7e-1167.4
NC_009937:412302:415716415716416384669Azorhizobium caulinodans ORS 571, complete genomeGntR family transcriptional regulator6e-1167.4
NC_018691:761560:778164778164778892729Alcanivorax dieselolei B5 chromosome, complete genomeGntR-family transcriptional regulator8e-1167
NC_008392:666000:681288681288681968681Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, GntR family1e-1066.6
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC2e-1066.2
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator2e-1066.2
NC_015656:1876627:188194718819471882705759Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR domain-containing protein2e-1065.9
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-1065.9
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator2e-1065.9
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family3e-1065.5
NC_009007:57804:634406344064171732Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequencetranscriptional regulator, GntR family2e-1065.5
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family5e-1064.7
NC_008260:125500:129582129582130286705Alcanivorax borkumensis SK2, complete genometranscriptional regulator, GntR family6e-1064.3
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator6e-1064.3
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family7e-1064.3
NC_015145:3236445:327110632711063271798693Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator7e-1063.9
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator9e-1063.9
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family1e-0963.5
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein1e-0963.5
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein1e-0963.2
NC_009664:63230:728087280873572765Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family2e-0962.8
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-0962.8
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family2e-0962.4
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator2e-0962.4
NC_015145:92397:917359173592400666Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator2e-0962.4
NC_015976:2064387:208343820834382084115678Sphingobium sp. SYK-6, complete genomeputative GntR family transcriptional regulator4e-0961.6
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator4e-0961.6
NC_006582:883922:909551909551910216666Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family6e-0961.2
UCMB5137:3660165:366330036633003663956657Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator5e-0961.2
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator5e-0961.2
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family4e-0961.2
NC_015856:268034:267125267125268093969Collimonas fungivorans Ter331 chromosome, complete genomeGntR family transcriptional regulator4e-0961.2
NC_014639:3584000:359051735905173591182666Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator6e-0960.8
CP002207:3584000:359051735905173591182666Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator6e-0960.8
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family8e-0960.5
NC_010002:2293670:231700023170002317677678Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family1e-0860.1
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR1e-0860.1
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-0859.7
NC_008027:1847040:184704018470401847699660Pseudomonas entomophila L48, complete genometranscriptional regulator (GntR-family)2e-0859.7
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR1e-0859.7
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR1e-0859.7
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator2e-0859.3
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family2e-0859.3
NC_014541:643604:667525667525668166642Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, GntR family3e-0858.9
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family2e-0858.9
NC_014963:3175912:317591231759123176580669Terriglobus saanensis SP1PR4 chromosome, complete genomeGntR family transcriptional regulator3e-0858.5
NC_008148:1859888:190316519031651903911747Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family3e-0858.5
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator4e-0858.2
NC_006350:1909639:191544419154441916208765Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family regulatory protein4e-0858.2
NC_009512:1691930:170640617064061707209804Pseudomonas putida F1, complete genometranscriptional regulator, GntR family4e-0858.2
NC_017986:4374979:438945543894554390258804Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator4e-0858.2
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator4e-0858.2
NC_003911:1791878:184090118409011841641741Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, GntR family4e-0858.2
NC_013946:2854219:287009028700902870737648Meiothermus ruber DSM 1279 chromosome, complete genomeGntR family transcriptional regulator4e-0858.2
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family8e-0857.4
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family1e-0757
NC_009921:5609770:561622556162255616935711Frankia sp. EAN1pec, complete genometranscriptional regulator, GntR family1e-0757
NC_015057:30743:366533665337351699Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetranscriptional regulator, GntR family1e-0757
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family1e-0757
NC_015458:3390674:340150434015043402238735Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator8e-0857
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein1e-0756.6
NC_008543:323773:326602326602327249648Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0756.6
NC_013850:2624899:262654026265402627256717Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_008595:312861:330795330795331451657Mycobacterium avium 104, complete genometranscriptional regulator, GntR family protein2e-0756.2
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family1e-0756.2
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family1e-0756.2
NC_012108:5273289:528731952873195287996678Desulfobacterium autotrophicum HRM2, complete genomeputative transcriptional regulator1e-0756.2
NC_013526:65495:890168901689705690Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family2e-0755.8
NC_010501:3987615:401279440127944013453660Pseudomonas putida W619, complete genometranscriptional regulator, GntR family2e-0755.8
NC_012731:2693091:270489427048942705610717Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical transcriptional regulator2e-0755.8
NC_015554:4002952:401532540153254016101777Alteromonas sp. SN2 chromosome, complete genomeGntR family transcriptional regulator2e-0755.8
NC_014119:977136:993862993862994566705Burkholderia sp. CCGE1002 chromosome chromosome 3, completetranscriptional regulator, GntR family2e-0755.8
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family2e-0755.8
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator2e-0755.5
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family3e-0755.5
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family3e-0755.1
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family3e-0755.1
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein4e-0755.1
NC_008786:1507139:153422415342241534952729Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, GntR family5e-0754.7
NC_020911:3046916:305943830594383060121684Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator5e-0754.3
NC_011283:2627050:262869126286912629407717Klebsiella pneumoniae 342 chromosome, complete genomeGntR family transcriptional regulator6e-0754.3
NC_011892:352652:367122367122367793672Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetranscriptional regulator, GntR family6e-0754.3
NC_009648:1956070:197127419712741971990717Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometranscriptional regulator6e-0754.3
NC_008563:1651270:167156316715631672249687Escherichia coli APEC O1, complete genomehypothetical protein8e-0753.9
AC_000091:1627049:163006616300661630752687Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator8e-0753.9
NC_010473:1712984:171600117160011716687687Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator8e-0753.9
CU928160:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator8e-0753.9
NC_000913:1625500:162637616263761627062687Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator8e-0753.9
CP002185:1727493:174728917472891747975687Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator8e-0753.9
NC_011415:1715644:173544017354401736126687Escherichia coli SE11 chromosome, complete genomeputative transcriptional repressor8e-0753.9
NC_011741:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator8e-0753.9
NC_012759:1517500:151843515184351519121687Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator8e-0753.9
NC_012947:2189533:220404922040492204735687Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeGntR family transcriptional regulator8e-0753.9
NC_012967:1593101:159611815961181596804687Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding transcriptional regulator8e-0753.9
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH7e-0753.9
NC_016845:2729654:274703827470382747754717Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,GntR family transcriptional regulator7e-0753.9
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family1e-0653.5
NC_010572:3925803:393580339358033936576774Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative GntR-family transcriptional regulator1e-0653.5
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family9e-0753.5
NC_015726:3452232:345223234522323453200969Cupriavidus necator N-1 chromosome 1, complete sequenceGntR family transcriptional regulator9e-0753.5
NC_008699:1247423:124742312474231248148726Nocardioides sp. JS614, complete genomeGntR domain protein2e-0653.1
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family2e-0653.1
NC_017201:139000:156442156442157077636Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB26,GntR family transcriptional regulator protein1e-0653.1
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein1e-0653.1
NC_015376:3631392:363629736362973637145849Burkholderia gladioli BSR3 chromosome chromosome 2, completeGntR domain protein1e-0653.1
NC_004463:2262467:226446822644682265103636Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein1e-0653.1
NC_017195:517344:536111536111536803693Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, GntR family3e-0652.4
NC_016906:4123000:412848441284844129173690Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator2e-0652.4
NC_003047:3360000:337337633733763374068693Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN2e-0652.4
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family2e-0652.4
NC_011004:4183993:422052942205294221239711Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, GntR family2e-0652.4
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_015594:410454:433254433254433979726Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR family transcriptional regulator3e-0652
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator3e-0652
NC_020453:1025891:103670110367011037402702Agromonas oligotrophica S58 DNA, complete genomeAtrA transcriptional regulator3e-0652
NC_011283:2836000:291203329120332912719687Klebsiella pneumoniae 342 chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator3e-0652
NC_013850:2846069:287440328744032875089687Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, GntR family3e-0652
NC_020911:3076791:308053030805303081186657Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator3e-0652
NC_014618:2423661:244155524415552442241687Enterobacter cloacae SCF1 chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family3e-0652
NC_013093:2633000:263436726343672635044678Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family4e-0651.6
NC_007974:785216:805329805329806051723Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family4e-0651.6
NC_016514:1627664:164873616487361649452717Enterobacter cloacae EcWSU1 chromosome, complete genomeGntR family transcriptional Regulator4e-0651.6
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family4e-0651.6
NC_015145:92397:992569925699936681Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator4e-0651.6
NC_015563:2702787:271975127197512720407657Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator4e-0651.6
NC_015723:1047418:105977810597781060590813Cupriavidus necator N-1 chromosome 2, complete sequenceGntR family transcriptional regulator5e-0651.2
NC_002678:5060670:510937251093725110070699Mesorhizobium loti MAFF303099, complete genometranscription regulator6e-0651.2
NC_010995:948041:986825986825987535711Cellvibrio japonicus Ueda107, complete genometranscriptional regulator, GntR family7e-0650.8
NC_009659:2849000:287099328709932871691699Janthinobacterium sp. Marseille chromosome, complete genomeGntR family transcriptional regulator6e-0650.8
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator8e-0650.4
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family8e-0650.4
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator9e-0650.4