Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:4993974 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
499397449956681695potassium-transporting ATPase subunit AQuickGO ontologyBLASTP
499611249974761365ethanolamine permease family proteinQuickGO ontologyBLASTP
49976094997776168hypothetical proteinBLASTP
49978214998672852hypothetical proteinBLASTP
49986884999341654transcriptional regulator GntR familyQuickGO ontologyBLASTP
49995335000093561transcriptional regulator TetR familyQuickGO ontologyBLASTP
50001195000913795oxidoreductase short chain dehydrogenasereductase familyQuickGO ontologyBLASTP
50011165001445330competence protein comEAQuickGO ontologyBLASTP
500155750035511995nucleotide sugar epimerasedehydratase WbpMQuickGO ontologyBLASTP
500364450046631020glycosyl transferase WbpLQuickGO ontologyBLASTP
50047535005715963UDP-glucose 4-epimerase putativeQuickGO ontologyBLASTP
50070775008771169530S ribosomal protein S1QuickGO ontologyBLASTP
50088935009582690cytidylate kinaseQuickGO ontologyBLASTP
500957950118042226prephenate dehydrogenase3-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
501181550129271113putative aminotransferaseQuickGO ontologyBLASTP
501293850140321095chorismate mutaseprephenate dehydrogenaseQuickGO ontologyBLASTP
501403250151231092phosphoserine aminotransferaseQuickGO ontologyBLASTP
501518250178512670DNA gyrase subunit AQuickGO ontologyBLASTP
501820650192821077translation initiation factor IF-2B subunit alphaQuickGO ontologyBLASTP
501939250207231332N-ethylammeline chlorohydrolaseQuickGO ontologyBLASTP