Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:3921199:3926984 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3926984, End: 3928585, Length: 1602

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:3801237:3802978380297838045821605Pseudomonas fluorescens PfO-1, complete genomechemotaxis sensory transducer0663
NC_016002:1326500:1335790133579013375951806Pseudogulbenkiania sp. NH8B, complete genomemethyl-accepting chemotaxis sensory transducer2e-38160
NC_010511:6711836:6731553673155367336942142Methylobacterium sp. 4-46 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer4e-22106
NC_017059:3163319:3178068317806831798191752Rhodospirillum photometricum DSM 122, complete genomehypothetical protein8e-1892.4
NC_011146:896000:9060919060919085592469Geobacter bemidjiensis Bem, complete genomemethyl-accepting chemotaxis sensory transducer6e-1479.3
NC_009483:3544333:3566182356618235677831602Geobacter uraniireducens Rf4 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer1e-1378.6
NC_011894:6793497:6794496679449667962021707Methylobacterium nodulans ORS 2060, complete genomemethyl-accepting chemotaxis sensory transducer2e-1274.3
NC_014973:3151701:3170594317059431722281635Geobacter sp. M18 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer8e-1272.4
NC_014973:2693672:2693672269367226953211650Geobacter sp. M18 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer8e-1272.4
NC_014206:2807879:2815857281585728175751719Geobacillus sp. C56-T3 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer2e-1170.9
NC_016593:956839:9626589626589643761719Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completemethyl-accepting chemotaxis sensory transducer4e-1170.1
NC_007519:3240864:3243157324315732449621806Desulfovibrio alaskensis G20 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer1e-1068.2
NC_012030:345837:370871370871371746876Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, complete2e-1067.8
NC_002939:805794:8057948057948074431650Geobacter sulfurreducens PCA, complete genomemethyl-accepting chemotaxis protein2e-1067.8
NC_010814:903199:9183209183209199421623Geobacter lovleyi SZ, complete genomemethyl-accepting chemotaxis sensory transducer4e-1066.6
NC_008027:2909000:2920577292057729221841608Pseudomonas entomophila L48, complete genomechemotaxis transducer8e-1065.9
NC_008702:2378890:2378890237889023805181629Azoarcus sp. BH72, complete genomeputative ribose and galactose chemoreceptor protein1e-0964.7
NC_010814:903199:9090419090419106631623Geobacter lovleyi SZ, complete genomemethyl-accepting chemotaxis sensory transducer2e-0964.7
NC_009697:419443:4317064317064337602055Clostridium botulinum A str. ATCC 19397 chromosome, completemethyl-accepting chemotaxis protein2e-0964.3
NC_002937:1915787:1923475192347519255622088Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completemethyl-accepting chemotaxis protein3e-0963.9
NC_008609:142471:1513531513531529751623Pelobacter propionicus DSM 2379, complete genomemethyl-accepting chemotaxis sensory transducer3e-0963.9
NC_008751:2988235:3002296300229630043832088Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomemethyl-accepting chemotaxis sensory transducer4e-0963.5
NC_010424:697187:7157487157487177872040Candidatus Desulforudis audaxviator MP104C, complete genomemethyl-accepting chemotaxis sensory transducer5e-0963.2
NC_013939:148706:1649901649901671372148Deferribacter desulfuricans SSM1, complete genomehypothetical protein6e-0962.8
NC_015672:101878:1150111150111171822172Flexistipes sinusarabici DSM 4947 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer6e-0962.8
NC_020291:3900046:3900046390004639020642019Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomemethyl-accepting chemotaxis protein8e-0962.4
NC_008700:2788363:2813492281349228154922001Shewanella amazonensis SB2B, complete genomeputative methyl-accepting chemotaxis sensory transducer2e-0861.2
NC_016629:3629848:3641192364119236436302439Desulfovibrio africanus str. Walvis Bay chromosome, completemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor2e-0861.2
NC_014836:155924:1578591578591598411983Desulfurispirillum indicum S5 chromosome, complete genomechemotaxis sensory transducer2e-0860.8
NC_014829:1475000:1492473149247314945932121Bacillus cellulosilyticus DSM 2522 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer3e-0860.5
NC_008700:1115436:1139226113922611407131488Shewanella amazonensis SB2B, complete genomeputative methyl-accepting chemotaxis sensory transducer4e-0860.1
NC_014654:221707:2217072217072237732067Halanaerobium sp. 'sapolanicus' chromosome, complete genomemethyl-accepting chemotaxis sensory transducer5e-0859.7
NC_015633:461143:4806784806784825671890Vibrio anguillarum 775 chromosome chromosome I, complete sequencemethyl-accepting chemotaxis protein1e-0758.9
NC_019978:686362:6922276922276941011875Halobacteroides halobius DSM 5150, complete genomemethyl-accepting chemotaxis protein1e-0758.5
NC_002939:1480474:1501915150191515035401626Geobacter sulfurreducens PCA, complete genomemethyl-accepting chemotaxis protein1e-0758.5
NC_016830:381049:3856223856223872291608Pseudomonas fluorescens F113 chromosome, complete genomemethyl-accepting chemotaxis protein I (serine chemoreceptor protein)1e-0758.5
NC_013161:2804228:2804228280422828076893462Cyanothece sp. PCC 8802, complete genomemethyl-accepting chemotaxis sensory transducer with GAF sensor2e-0758.2
NC_004193:375416:5665415665415683761836Oceanobacillus iheyensis HTE831, complete genomemethyl-accepting chemotaxis protein1e-0758.2
NC_011296:1086223:1087639108763910892221584Thermodesulfovibrio yellowstonii DSM 11347, complete genomemethyl-accepting chemotaxis protein1e-0758.2
NC_015379:3736500:3740521374052137424131893Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative methyl-accepting chemotaxis protein1e-0758.2
NC_015437:767572:7860897860897878071719Selenomonas sputigena ATCC 35185 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer1e-0758.2
NC_013946:879199:8960218960218983392319Meiothermus ruber DSM 1279 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer2e-0757.8
NC_016616:2997348:3044547304454730465682022Dechlorosoma suillum PS chromosome, complete genomemethyl-accepting chemotaxis protein2e-0757.4
NC_008577:1489643:1504135150413515061382004Shewanella sp. ANA-3 chromosome 1, complete sequencemethyl-accepting chemotaxis sensory transducer3e-0757.4
NC_014394:93344:1072451072451088701626Gallionella capsiferriformans ES-2 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer4e-0757
NC_014152:191200:1955241955241977462223Thermincola sp. JR, complete genomemethyl-accepting chemotaxis sensory transducer with Cache sensor4e-0757
NC_016830:3230939:3251129325112932526221494Pseudomonas fluorescens F113 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer4e-0757
NC_010501:2511887:2517041251704125186661626Pseudomonas putida W619, complete genomemethyl-accepting chemotaxis sensory transducer3e-0757
NC_000917:940088:9400889400889421212034Archaeoglobus fulgidus DSM 4304, complete genomemethyl-accepting chemotaxis protein (tlpC-1)3e-0757
NC_004578:6334735:6347028634702863486531626Pseudomonas syringae pv. tomato str. DC3000, complete genomemethyl-accepting chemotaxis protein5e-0756.6
NC_008463:2654014:2673094267309426747011608Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative methyl-accepting chemotaxis transducer4e-0756.6
NC_008570:1852286:1870808187080818725801773Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomemethyl-accepting chemotaxis protein4e-0756.6
NC_012660:3320330:3324083332408333256961614Pseudomonas fluorescens SBW25 chromosome, complete genomeputative methyl-accepting chemotaxis protein4e-0756.6
NC_015680:1315040:1347889134788913491151227Pyrococcus yayanosii CH1 chromosome, complete genomemethyl-accepting chemotaxis protein4e-0756.6
NC_017068:1852708:1861069186106918630541986Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative methyl-accepting chemotaxis protein4e-0756.6
NC_013791:1152500:1154508115450811564871980Bacillus pseudofirmus OF4 chromosome, complete genomemethyl-accepting chemotaxis protein4e-0756.6
NC_012796:3267569:3300855330085533030412187Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein5e-0756.2
NC_016047:3406488:3407460340746034091601701Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemethyl-accepting chemotaxis protein6e-0756.2
NC_000917:940088:9509479509479534512505Archaeoglobus fulgidus DSM 4304, complete genomemethyl-accepting chemotaxis protein (tlpC-2)6e-0756.2
NC_012796:3374911:3382782338278233849682187Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein8e-0755.8
NC_002939:805794:8206328206328228692238Geobacter sulfurreducens PCA, complete genomemethyl-accepting chemotaxis protein, putative8e-0755.8
NC_008577:3738758:3738758373875837402451488Shewanella sp. ANA-3 chromosome 1, complete sequencemethyl-accepting chemotaxis sensory transducer7e-0755.8
NC_016830:6589575:6608791660879166107671977Pseudomonas fluorescens F113 chromosome, complete genomemethyl-accepting chemotaxis protein9e-0755.5
NC_007519:2773000:2799295279929528014632169Desulfovibrio alaskensis G20 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer1e-0655.5
NC_020209:4549563:4566169456616945681451977Pseudomonas poae RE*1-1-14, complete genomemethyl-accepting chemotaxis protein1e-0655.5
NC_012660:5242392:5265240526524052665591320Pseudomonas fluorescens SBW25 chromosome, complete genomeputative MCP-type signal transduction protein1e-0655.1
NC_013741:1144592:1174829117482911776062778Archaeoglobus profundus DSM 5631, complete genomemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor1e-0655.1
NC_016641:4853448:4856147485614748581472001Paenibacillus terrae HPL-003 chromosome, complete genomemethyl-accepting chemotaxis protein mcpA (H1)1e-0655.1
NC_008750:807446:8265698265698282331665Shewanella sp. W3-18-1, complete genomemethyl-accepting chemotaxis sensory transducer2e-0654.7
NC_018515:3108755:3108755310875531108152061Desulfosporosinus meridiei DSM 13257 chromosome, complete genomemethyl-accepting chemotaxis protein2e-0654.7
NC_016616:1091606:1128774112877411309152142Dechlorosoma suillum PS chromosome, complete genomemethyl-accepting chemotaxis protein2e-0654.7
NC_012796:1049034:1088790108879010912582469Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein2e-0654.3
NC_009831:1255995:1263449126344912655662118Shewanella sediminis HAW-EB3, complete genomemethyl-accepting chemotaxis sensory transducer2e-0654.3
NC_007912:2930063:2942664294266429443101647Saccharophagus degradans 2-40, complete genomeputative methyl-accepting chemotaxis sensory transducer3e-0653.9
NC_011830:3528665:3546696354669635487832088Desulfitobacterium hafniense DCB-2, complete genomemethyl-accepting chemotaxis sensory transducer with Cache sensor3e-0653.9
NC_014394:808734:8149518149518169331983Gallionella capsiferriformans ES-2 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer3e-0653.9
NC_012660:4558122:4566240456624045679311692Pseudomonas fluorescens SBW25 chromosome, complete genomeputative methyl-accepting chemotaxis protein3e-0653.9
NC_012881:2878000:2888531288853128909392409Desulfovibrio salexigens DSM 2638, complete genomemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor4e-0653.5
NC_012796:1049034:1168597116859711704651869Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein4e-0653.5
NC_014098:2971011:2996035299603529977531719Bacillus tusciae DSM 2912 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer with Cache sensor4e-0653.5
NC_015424:1603000:1627360162736016289911632Aeromonas veronii B565 chromosome, complete genomemethyl-accepting chemotaxis protein4e-0653.5
NC_011901:1398376:1424396142439614259671572Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor4e-0653.5
NC_003030:3871658:3892795389279538949032109Clostridium acetobutylicum ATCC 824, complete genomeMembrane-associated methyl-accepting chemotaxis protein with HAMP domain3e-0653.5
NC_015733:2658337:2684205268420526861481944Pseudomonas putida S16 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer3e-0653.5
NC_013959:2449315:2450986245098624525991614Sideroxydans lithotrophicus ES-1 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer3e-0653.5
NC_004129:5781413:5803572580357258049751404Pseudomonas fluorescens Pf-5, complete genomeaerotaxis receptor Aer-26e-0653.1
NC_012491:1187864:1209381120938112113601980Brevibacillus brevis NBRC 100599, complete genomeprobable methyl-accepting chemotaxis protein6e-0653.1
NC_009699:2635745:2650478265047826524962019Clostridium botulinum F str. Langeland chromosome, complete genomemethyl-accepting chemotaxis protein5e-0653.1
NC_017297:2635892:2650626265062626526442019Clostridium botulinum F str. 230613 chromosome, complete genomemethyl-accepting chemotaxis protein5e-0653.1
NC_007005:1636875:1678195167819516798141620Pseudomonas syringae pv. syringae B728a, complete genomeHistidine kinase, HAMP region:Bacterial chemotaxis sensory transducer5e-0653.1
NC_004578:5192110:5218750521875052203691620Pseudomonas syringae pv. tomato str. DC3000, complete genomemethyl-accepting chemotaxis protein5e-0653.1
NC_012796:1049034:1119942111994211224102469Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein7e-0652.8
NC_014253:795869:8177868177868199032118Methanohalobium evestigatum Z-7303 chromosome, complete genomeCache sensor-containing methyl-accepting chemotaxis sensory transducer7e-0652.8
NC_012796:1049034:1057193105719310596612469Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein7e-0652.8
NC_008750:2332000:2351876235187623535041629Shewanella sp. W3-18-1, complete genomemethyl-accepting chemotaxis sensory transducer6e-0652.8
NC_002505:514732:5413195413195429081590Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completemethyl-accepting chemotaxis protein6e-0652.8
NC_012668:62500:7743277432790211590Vibrio cholerae MJ-1236 chromosome 1, complete sequencemethyl-accepting chemotaxis protein6e-0652.8
NC_016629:3629848:3647034364703436485721539Desulfovibrio africanus str. Walvis Bay chromosome, completemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor9e-0652.4
NC_015687:1478668:1497497149749714992031707Clostridium acetobutylicum DSM 1731 chromosome, complete genomechemotaxis sensory transducer9e-0652.4
NC_015977:3011177:3012965301296530144641500Roseburia hominis A2-183 chromosome, complete genomemethyl-accepting chemotaxis protein9e-0652.4
NC_007519:1782067:1808192180819218108852694Desulfovibrio alaskensis G20 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer8e-0652.4
NC_021184:148000:1544641544641560861623Desulfotomaculum gibsoniae DSM 7213, complete genomemethyl-accepting chemotaxis protein8e-0652.4
NC_005773:3851433:3852321385232138538861566Pseudomonas syringae pv. phaseolicola 1448A, complete genomeaerotaxis receptor Aer8e-0652.4
NC_007005:2686551:2731882273188227337411860Pseudomonas syringae pv. syringae B728a, complete genomeHistidine kinase, HAMP region:Bacterial chemotaxis sensory transducer8e-0652.4
NC_012796:129500:1370841370841391742091Desulfovibrio magneticus RS-1, complete genomemethyl-accepting chemotaxis protein1e-0552.4