Pre_GI Gene

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Host: NC_008700 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008700:1115436 Shewanella amazonensis SB2B, complete genome

Host Lineage: Shewanella amazonensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from shallow marine deposits (coastal shelf mud) of the Amazon River delta off of the coast of Brazil. Iron-reducing bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella amazonensis is capable of anaerobically reducing iron, manganese, and sulfur compounds and may be important to the cycling of these compounds in the environment.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11154361116371936riboflavin biosynthesis protein RibFQuickGO ontologyBLASTP
111641411192362823isoleucyl-tRNA synthetaseQuickGO ontologyBLASTP
11192451119751507Signal peptidase IIQuickGO ontologyBLASTP
11197551120174420peptidylprolyl isomerase FKBP-typeQuickGO ontologyBLASTP
112017411211159424-hydroxy-3-methylbut-2-enyl diphosphate reductaseQuickGO ontologyBLASTP
11213441121862519type IV pilus assembly protein PilVQuickGO ontologyBLASTP
11218681122842975type IV pilus assembly protein PilWQuickGO ontologyBLASTP
11228551123325471type IV pilus assembly protein PilXQuickGO ontologyBLASTP
112332211269273606type IV pilin biogenesis protein putativeQuickGO ontologyBLASTP
11269451127343399type IV pilus biogenesis protein PilEQuickGO ontologyBLASTP
11277031128194492methylation site containing proteinQuickGO ontologyBLASTP
11283121128824513type IV pilus biogenesis protein putativeQuickGO ontologyBLASTP
11290441129382339nitrogen regulatory protein P-IIQuickGO ontologyBLASTP
112960211308911290NADH dehydrogenaseQuickGO ontologyBLASTP
113090211319151014transcriptional regulator LacI familyQuickGO ontologyBLASTP
113233211349772646TonB-dependent receptorQuickGO ontologyBLASTP
113504111365641524tryptophan halogenaseQuickGO ontologyBLASTP
11366321137324693conserved hypothetical proteinBLASTP
11383661139229864type IV pilus assembly protein PilMQuickGO ontologyBLASTP
113922611407131488putative methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
114074511433992655Beta-N-acetylhexosaminidaseQuickGO ontologyBLASTP