Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:5781413 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
578141357825941182aspartate aminotransferaseQuickGO ontologyBLASTP
578270357844481746amidohydrolase family proteinQuickGO ontologyBLASTP
57844485785374927cobalamin synthesis proteinP47K family proteinQuickGO ontologyBLASTP
57855405786241702hypothetical proteinBLASTP
578634357876981356serine hydroxymethyltransferaseQuickGO ontologyBLASTP
57881905788828639helix-turn-helix domain proteinQuickGO ontologyBLASTP
57888155789696882hypothetical proteinBLASTP
57897915790489699exsB proteinQuickGO ontologyBLASTP
57906105791164555cytochrome b561 family proteinQuickGO ontologyBLASTP
57913235792210888protoheme IX farnesyltransferaseQuickGO ontologyBLASTP
57922215792550330cytochrome o ubiquinol oxidase subunit IVQuickGO ontologyBLASTP
57925515793177627cytochrome o ubiquinol oxidase subunit IIIQuickGO ontologyBLASTP
579318157951992019cytochrome o ubiquinol oxidase subunit IQuickGO ontologyBLASTP
57952035796147945cytochrome o ubiquinol oxidase subunit IIQuickGO ontologyBLASTP
57969445797432489disulfide bond formation protein BQuickGO ontologyBLASTP
57974775797629153hypothetical protein
579781757989981182flavohemoproteinQuickGO ontologyBLASTP
579915558007111557anaerobic nitric oxide reductase transcription regulatorQuickGO ontologyBLASTP
58008415801791951chemotaxis protein CheVQuickGO ontologyBLASTP
58017955802274480acetyltransferase GNAT familyQuickGO ontologyBLASTP
58023735802699327hypothetical protein
58027915803540750hypothetical proteinBLASTP
580357258049751404aerotaxis receptor Aer-2QuickGO ontologyBLASTP