Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3702719 Shigella flexneri 2a str. 301, complete genome

Start: 3702719, End: 3703015, Length: 297

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:3946500:3963270396327039644271158Shigella sonnei 53G, complete genomemultidrug efflux system protein MdtE2e-42171
NC_007384:3741708:3744846374484637460031158Shigella sonnei Ss046, complete genomehypothetical protein2e-42171
NC_010473:3722571:3755000375500037561571158Escherichia coli str. K-12 substr. DH10B, complete genomemultidrug resistance efflux transporter2e-42171
NC_010468:231000:2342662342662354231158Escherichia coli ATCC 8739, complete genomeefflux transporter, RND family, MFP subunit2e-42171
NC_009800:3685651:3700543370054337017001158Escherichia coli HS, complete genomemultidrug resistance protein MdtE2e-42171
NC_009801:3956917:3971043397104339722001158Escherichia coli E24377A, complete genomemultidrug resistance protein MdtE2e-42171
NC_000913:3624826:3657255365725536584121158Escherichia coli K12, complete genomemultidrug resistance efflux transporter2e-42171
NC_007613:3470314:3504798350479835059551158Shigella boydii Sb227, complete genomehypothetical protein2e-42171
CU928145:3983432:4024340402434040254971158Escherichia coli 55989 chromosome, complete genomemultidrug resistance efflux transporter2e-42171
NC_013353:4313462:4326442432644243275991158Escherichia coli O103:H2 str. 12009, complete genomemultidrug resistance efflux transporter MdtE2e-42171
AP010958:4313462:4326442432644243275991158Escherichia coli O103:H2 str. 12009 DNA, complete genomemultidrug resistance efflux transporter MdtE2e-42171
CU928160:3709081:3723217372321737243741158Escherichia coli IAI1 chromosome, complete genomemultidrug resistance efflux transporter2e-42171
AC_000091:3976888:3980026398002639811831158Escherichia coli W3110 DNA, complete genomemultidrug resistance efflux transporter2e-42171
NC_016902:246767:2499052499052510621158Escherichia coli KO11FL chromosome, complete genomeRND family efflux transporter MFP subunit2e-42171
NC_013364:4306000:4318721431872143198781158Escherichia coli O111:H- str. 11128, complete genomemultidrug resistance efflux transporter MdtE2e-42171
NC_013361:4566779:4580001458000145811581158Escherichia coli O26:H11 str. 11368 chromosome, complete genomemultidrug efflux system protein MdtE2e-42171
NC_012967:3549880:3588723358872335898801158Escherichia coli B str. REL606 chromosome, complete genomemultidrug efflux system protein MdtE2e-42171
NC_012947:248000:2512962512962524531158Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completemultidrug efflux system protein MdtE2e-42171
NC_012759:3529657:3545749354574935469061158Escherichia coli BW2952 chromosome, complete genomemultidrug efflux system protein MdtE2e-42171
NC_011741:3709081:3723217372321737243741158Escherichia coli IAI1 chromosome, complete genomemultidrug efflux system protein MdtE2e-42171
CP002185:3822470:3855011385501138561681158Escherichia coli W, complete genomemultidrug resistance efflux transporter2e-42171
CP002516:246767:2499052499052510621158Escherichia coli KO11, complete genomeefflux transporter, RND family, MFP subunit2e-42171
NC_011748:3983432:4024340402434040254971158Escherichia coli 55989, complete genomemultidrug efflux system protein MdtE2e-42171
NC_010658:3622610:3637035363703536381921158Shigella boydii CDC 3083-94, complete genomemultidrug resistance protein MdtE4e-42169
NC_011415:3887997:3904374390437439055311158Escherichia coli SE11 chromosome, complete genomemultidrug efflux system protein MdtE3e-41167
NC_015566:1127595:1159707115970711608941188Serratia sp. AS12 chromosome, complete genomeRND family efflux transporter MFP subunit3e-1994
NC_015567:1127780:1159892115989211610791188Serratia sp. AS9 chromosome, complete genomeRND family efflux transporter MFP subunit3e-1994
NC_011666:1572487:1575648157564815768591212Methylocella silvestris BL2, complete genomeefflux transporter, RND family, MFP subunit3e-1580.9
NC_010067:4149298:4161654416165441628111158Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1580.1
NC_010338:1394550:1415350141535014165071158Caulobacter sp. K31, complete genomeefflux transporter, RND family, MFP subunit7e-1579.3
NC_006511:3364448:3367626336762633687831158Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtransmembrane protein affecting septum formation and cell membrane permeability1e-1478.6
NC_008570:3220539:3273334327333432745271194Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeacriflavin resistance protein A1e-1478.6
NC_017075:1674758:1698680169868016998701191Rubrivivax gelatinosus IL144, complete genomemultidrug resistance protein MexA6e-1476.3
NC_015424:3112637:3151475315147531526681194Aeromonas veronii B565 chromosome, complete genomeAcriflavin resistance protein A6e-1475.9
NC_010814:3673983:3693290369329036944891200Geobacter lovleyi SZ, complete genomeefflux transporter, RND family, MFP subunit3e-1373.6
NC_011296:1542835:1549918154991815510631146Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacriflavine resistance protein A1e-1272
NC_016002:2453919:2472106247210624732901185Pseudogulbenkiania sp. NH8B, complete genomecation/multidrug efflux system, membrane-fusion protein AcrA5e-1269.7
NC_007509:71954:1050031050031062591257Burkholderia sp. 383 chromosome 3, complete sequenceSecretion protein, HlyD family7e-1269.3
NC_013592:3212834:3237427323742732385961170Dickeya dadantii Ech586, complete genomeefflux transporter, RND family, MFP subunit8e-1268.9
NC_014931:1642179:1666374166637416676001227Variovorax paradoxus EPS chromosome, complete genomeefflux transporter, RND family, MFP subunit3e-1167.4
NC_013456:2528284:2528284252828425294231140Vibrio sp. Ex25 chromosome 1, complete genomemembrane fusion protein of RND family multidrug efflux pump4e-1166.6
NC_013859:9500:1033710337115391203Azospirillum sp. B510 plasmid pAB510e, complete sequenceefflux transporter3e-1063.9
NC_014758:579741:5960655960655972911227Calditerrivibrio nitroreducens DSM 19672 chromosome, completeefflux transporter, rnd family, mfp subunit3e-1063.9
NC_015379:2482901:2492232249223224933801149Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,acriflavine resistance protein A4e-1063.5
NC_012660:4558122:4561259456125945624431185Pseudomonas fluorescens SBW25 chromosome, complete genomeputative acriflavine resistance protein A4e-1063.5
NC_007484:1229899:1231994123199412331001107Nitrosococcus oceani ATCC 19707, complete genomeSecretion protein HlyD8e-1062.4
NC_015222:3137167:3152336315233631535771242Nitrosomonas sp. AL212 chromosome, complete genomeefflux transporter, RND family, MFP subunit1e-0961.6
NC_012988:1459961:1504960150496015059701011Methylobacterium extorquens DM4, complete genomeRND efflux transporter, membrane fusion protein subunit3e-0857
NC_010725:3917369:3928206392820639294021197Methylobacterium populi BJ001, complete genomeefflux transporter, RND family, MFP subunit3e-0857
NC_009512:3251545:3254778325477832559831206Pseudomonas putida F1, complete genomeefflux transporter, RND family, MFP subunit8e-0855.8
NC_007492:3332839:3332839333283933339961158Pseudomonas fluorescens PfO-1, complete genomeSecretion protein HlyD1e-0755.1
NC_004547:3866439:3869665386966538708371173Erwinia carotovora subsp. atroseptica SCRI1043, complete genomemultidrug resistance protein3e-0754.3
NC_011988:1036618:1039797103979710410321236Agrobacterium vitis S4 chromosome 2, complete genomeacriflavin resistance protein A3e-0753.9
NC_008380:4078670:4098266409826640994771212Rhizobium leguminosarum bv. viciae 3841, complete genomeputative RND family transporter5e-0753.1
NC_010994:3666651:3686151368615136873621212Rhizobium etli CIAT 652, complete genomeprobable protein secretion protein, HlyD family6e-0752.8
NC_012850:3454270:3473334347333434745451212Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeefflux transporter, RND family, MFP subunit6e-0752.8
NC_007508:2756945:2759759275975927608711113Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomemembrane fusion protein7e-0752.8
NC_007005:3414579:3440050344005034412521203Pseudomonas syringae pv. syringae B728a, complete genomeSecretion protein HlyD8e-0752.4
NC_007947:1703326:1707894170789417090961203Methylobacillus flagellatus KT, complete genomesecretion protein HlyD8e-0752.4
NC_012997:4491871:4492651449265144938201170Teredinibacter turnerae T7901, complete genomeefflux transporter, RND family, MFP subunit1e-0652
NC_007761:3564449:3584663358466335858741212Rhizobium etli CFN 42, complete genomeprobable protein secretion protein, HlyD family2e-0651.2
NC_010002:528529:5317005317005329921293Delftia acidovorans SPH-1, complete genomeefflux transporter, RND family, MFP subunit3e-0650.8
NC_007492:3180480:3183639318363931847961158Pseudomonas fluorescens PfO-1, complete genomeSecretion protein HlyD3e-0650.8
NC_008752:415599:4187824187824200861305Acidovorax avenae subsp. citrulli AAC00-1, complete genomeefflux transporter, RND family, MFP subunit3e-0650.8
NC_012489:3503632:3523342352334235244841143Gemmatimonas aurantiaca T-27, complete genomemultidrug resistance protein6e-0649.7