Pre_GI Gene

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Host: NC_012850 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012850:3454270 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
34534823454273792short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
34542703455028759GntR domain proteinQuickGO ontologyBLASTP
345518934563341146Mandelate racemasemuconate lactonizing proteinQuickGO ontologyBLASTP
34563483457259912hypothetical proteinBLASTP
34572593457594336hypothetical protein
345763934590331395FAD dependent oxidoreductaseQuickGO ontologyBLASTP
34590533459838786short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
3460349346042577tRNA-MetQuickGO ontology
346063334607461145S ribosomal RNAQuickGO ontologyBLASTP
34609333463834290223S ribosomal RNAQuickGO ontologyBLASTP
3464345346442076tRNA-AlaQuickGO ontologyBLASTP
3464514346459077tRNA-IleQuickGO ontologyBLASTP
34649353466403146916S ribosomal RNAQuickGO ontologyBLASTP
34671233467461339protein of unknown function DUF883 ElaBQuickGO ontologyBLASTP
34676023467808207hypothetical proteinBLASTP
34679673468773807pseudouridine synthaseQuickGO ontologyBLASTP
34687703469474705phosphoribosyltransferaseQuickGO ontologyBLASTP
346957834713231746Citrate transporterQuickGO ontologyBLASTP
34714083472352945Phosphoribosylaminoimidazolesuccinocarboxamide synthaseQuickGO ontologyBLASTP
34725633473165603transcriptional regulator TetR familyQuickGO ontologyBLASTP
347333434745451212efflux transporter RND family MFP subunitQuickGO ontologyBLASTP
347459434777043111transporter hydrophobeamphiphile efflux-1 HAE1 familyQuickGO ontologyBLASTP
347785534792881434RND efflux system outer membrane lipoprotein NodT familyQuickGO ontologyBLASTP