Pre_GI: BLASTP Hits

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Query: NC_004129:4093610:4115162 Pseudomonas fluorescens Pf-5, complete genome

Start: 4115162, End: 4115443, Length: 282

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:2022000:202221020222102022491282Pseudomonas denitrificans ATCC 13867, complete genomepeptidyl-prolyl cis-trans isomerase C21e-40164
NC_009092:2902171:290551829055182905796279Shewanella loihica PV-4, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-33140
NC_002937:1548081:155130715513071551591285Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepeptidyl-prolyl cis-trans isomerase C2e-27120
NC_014393:187454:192762192762193505744Clostridium cellulovorans 743B chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-26117
NC_015276:2769000:277422527742252774503279Marinomonas mediterranea MMB-1 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-22104
NC_009654:2940278:294357329435732943851279Marinomonas sp. MWYL1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-21101
NC_010634:166900:187673187673187969297Yersinia pseudotuberculosis PB1/+, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-2199.8
NC_006155:172313:193079193079193360282Yersinia pseudotuberculosis IP 32953, complete genomepeptidyl-prolyl cis-trans isomerase5e-2199.8
NC_009706:3845039:384901938490193849762744Clostridium kluyveri DSM 555 chromosome, complete genomefoldase-like protein1e-2098.2
NC_011837:3776541:378048837804883781264777Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-2098.2
NC_015425:2690448:270301927030192703762744Clostridium botulinum BKT015925 chromosome, complete genomepeptidil-prolyl cis-trans isomerase2e-2097.8
NC_008593:2457594:247010024701002470843744Clostridium novyi NT, complete genomepeptidil-prolyl cis-trans isomerase2e-2097.8
NC_021182:162236:167498167498168244747Clostridium pasteurianum BC1, complete genomeparvulin-like peptidyl-prolyl isomerase2e-2097.8
NC_012563:36000:693126931270055744Clostridium botulinum A2 str. Kyoto, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_009495:38000:752547525475997744Clostridium botulinum A str. ATCC 3502 chromosome, complete genomepeptidil-prolyl isomerase5e-2096.3
NC_009697:38000:680576805768800744Clostridium botulinum A str. ATCC 19397 chromosome, completepeptidil-prolyl isomerase family protein5e-2096.3
NC_009698:38000:680586805868801744Clostridium botulinum A str. Hall chromosome, complete genomepeptidil-prolyl isomerase5e-2096.3
NC_009699:33452:700837008370826744Clostridium botulinum F str. Langeland chromosome, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_012658:35500:691566915669899744Clostridium botulinum Ba4 str. 657 chromosome, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_017297:33519:702857028571028744Clostridium botulinum F str. 230613 chromosome, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_010520:35845:690946909469837744Clostridium botulinum A3 str. Loch Maree, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_010516:42475:750317503175774744Clostridium botulinum B1 str. Okra, complete genomepeptidil-prolyl isomerase family protein5e-2096.3
NC_014328:85290:115121115121115864744Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative foldase-like protein7e-2095.9
NC_011899:2286884:229515822951582296156999Halothermothrix orenii H 168, complete genomepeptidil-prolyl cis-trans isomerase8e-2095.5
NC_010501:3013103:301510130151013015376276Pseudomonas putida W619, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1994.7
NC_008262:297960:311887311887312633747Clostridium perfringens SM101, complete genomePPIC-type PPIASE domain protein2e-1994.4
NC_015687:303810:319048319048319791744Clostridium acetobutylicum DSM 1731 chromosome, complete genomepeptidil-prolyl cis-trans isomerase4e-1890.1
NC_003030:303812:319051319051319794744Clostridium acetobutylicum ATCC 824, complete genomePeptidil-prolyl cis-trans isomerase4e-1890.1
NC_008261:304000:317140317140317886747Clostridium perfringens ATCC 13124, complete genomepeptidyl-prolyl cis-trans isomerase family protein2e-1787.4
NC_003366:332500:345779345779346525747Clostridium perfringens str. 13, complete genomehypothetical protein2e-1787.4
NC_009922:2850320:286539528653952866348954Alkaliphilus oremlandii OhILAs, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-1684
NC_009633:168266:179607179607180566960Alkaliphilus metalliredigens QYMF chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-1684
NC_017200:1157835:117904211790421179908867Bacillus thuringiensis serovar finitimus YBT-020 chromosome,peptidyl-prolyl isomerase5e-1683.2
NC_003909:1139556:115918111591811160044864Bacillus cereus ATCC 10987, complete genomepeptidylprolyl isomerase5e-1682.8
NC_011969:1084000:110399811039981104858861Bacillus cereus Q1 chromosome, complete genomepeptidyl-prolyl isomerase7e-1682.4
NC_011146:2916223:2919097291909729201521056Geobacter bemidjiensis Bem, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1582
NC_010184:1017000:103395610339561034825870Bacillus weihenstephanensis KBAB4, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1581.6
NC_016627:3659500:365971136597113660460750Clostridium clariflavum DSM 19732 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase2e-1581.3
NC_011772:1011220:102643810264381027307870Bacillus cereus G9842, complete genomepeptidylprolyl isomerase PrsA13e-1580.5
NC_009524:1488714:149441914944191494697279Psychrobacter sp. PRwf-1 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-1478.6
NC_015519:488550:504853504853505755903Tepidanaerobacter sp. Re1 chromosome, complete genomeFoldase protein prsA2e-1477.8
NC_016628:763833:789442789442789720279Vibrio furnissii NCTC 11218 chromosome 2, complete sequencepeptidyl-prolyl cis-trans isomerase C2e-1477.8
NC_011725:1032500:105122210512221052082861Bacillus cereus B4264 chromosome, complete genomepeptidyl-prolyl isomerase3e-1477
NC_004722:1008500:102487310248731025733861Bacillus cereus ATCC 14579, complete genomepeptidylprolyl isomerase3e-1477
NC_011725:1182000:118423111842311185088858Bacillus cereus B4264 chromosome, complete genomepeptidyl-prolyl isomerase3e-1373.6
NC_010002:1447711:145814514581451459080936Delftia acidovorans SPH-1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-1271.2
NC_015563:5843703:585966958596695860577909Delftia sp. Cs1-4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-1269.7
NC_020291:117983:1216791216791227041026Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomefoldase protein PrsA7e-1269.3
NC_015138:4584846:459276245927624593661900Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completePpiC-type peptidyl-prolyl cis-trans isomerase4e-1167
NC_008752:4589119:460003446000344600933900Acidovorax avenae subsp. citrulli AAC00-1, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-1166.6
NC_014560:171931:178636178636179535900Helicobacter pylori SJM180 chromosome, complete genomeputative peptidyl-prolyl cis-trans isomerase9e-1165.5
NC_021150:2348214:2365200236520023670741875Azotobacter vinelandii CA6, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-1064.3
NC_012560:2348202:2365188236518823670621875Azotobacter vinelandii DJ, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-1064.3
NC_009943:305854:3067093067093086041896Candidatus Desulfococcus oleovorans Hxd3, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-1063.9
NC_016751:1623756:1636380163638016383471968Marinitoga piezophila KA3 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase3e-1063.9
NC_015731:2148517:2167044216704421683661323Nitrosomonas sp. Is79A3 chromosome, complete genomeChaperone surA6e-1062.8
NC_014654:1:2808328083291051023Halanaerobium sp. 'sapolanicus' chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase7e-1062.8
NC_014614:554949:5589805589805600441065Clostridium sticklandii, complete genomeputative foldase lipoprotein (Late stage protein export lipoprotein) precursor8e-1062.4
NC_016641:1639356:1644228164422816453401113Paenibacillus terrae HPL-003 chromosome, complete genomeParvulin-like peptidyl-prolyl isomerase1e-0962
NC_002488:1099975:1143435114343511454021968Xylella fastidiosa 9a5c, complete genomepeptidyl-prolyl cis-trans isomerase1e-0961.6
NC_008767:273759:2773432773432785601218Neisseria meningitidis FAM18, complete genomeputative rotamase1e-0961.6
NC_014972:3000138:3015278301527830171581881Desulfobulbus propionicus DSM 2032 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0960.8
NC_014483:39729:4567245672467901119Paenibacillus polymyxa E681 chromosome, complete genomeParvulin-like peptidyl-prolyl isomerase4e-0960.5
NC_016599:144844:1563711563711583381968Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase3e-0960.5
NC_011992:1234610:1246343124634312482651923Acidovorax ebreus TPSY, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0960.5
NC_008782:2781229:2791280279128027932021923Acidovorax sp. JS42, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0960.5
NC_015422:1694363:1713680171368017156021923Alicycliphilus denitrificans K601 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase4e-0960.1
NC_014532:2146466:216159921615992162411813Halomonas elongata DSM 2581, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase5e-0959.7
NC_014722:1497244:151555515155551516337783Burkholderia rhizoxinica HKI 454, complete genomepeptidyl-prolyl cis-trans isomerase5e-0959.7
NC_007645:2204066:2215875221587522177611887Hahella chejuensis KCTC 2396, complete genomeParvulin-like peptidyl-prolyl isomerase5e-0959.7
NC_014539:1839840:1859971185997118619111941Burkholderia sp. CCGE1003 chromosome 1, complete sequencePpiC-type peptidyl-prolyl cis-trans isomerase8e-0958.9
NC_014840:286767:307620307620308405786Pantoea sp. At-9b plasmid pPAT9B03, complete sequencenitrogen fixation protein NifM9e-0958.9
NC_017075:1674758:1674758167475816766651908Rubrivivax gelatinosus IL144, complete genomeputative peptidyl-prolyl cis-trans isomerase PpiD1e-0858.2
NC_008344:669498:6701106701106720021893Nitrosomonas eutropha C91, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-0858.2
NC_002516:4321000:433440343344034335221819Pseudomonas aeruginosa PAO1, complete genomeprobable peptidyl-prolyl cis-trans isomerase, PpiC-type2e-0857.8
NC_002947:2589951:2633536263353626354071872Pseudomonas putida KT2440, complete genomepeptidyl-prolyl cis-trans isomerase D, putative4e-0857
NC_008463:1188951:119043211904321191250819Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative peptidyl-prolyl cis-trans isomerase5e-0856.6
NC_016599:144844:1592011592011605561356Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeparvulin-like peptidyl-prolyl isomerase5e-0856.2
NC_013446:1889500:1899634189963419015321899Comamonas testosteroni CNB-2, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase9e-0855.5
NC_009697:3753527:3757405375740537584151011Clostridium botulinum A str. ATCC 19397 chromosome, completepeptidyl-prolyl isomerase3e-0754.3
NC_009698:3647955:3654515365451536555251011Clostridium botulinum A str. Hall chromosome, complete genomepeptidyl-prolyl isomerase3e-0754.3
NC_007484:1975322:1995112199511219970341923Nitrosococcus oceani ATCC 19707, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-0754.3
NC_019940:3518670:354103535410353541922888Thioflavicoccus mobilis 8321 chromosome, complete genomenitrogen fixation protein NifM2e-0754.3
NC_004129:4596040:4599284459928446011551872Pseudomonas fluorescens Pf-5, complete genomepeptidyl-prolyl cis-trans isomerase D3e-0753.5
NC_010516:3845942:3852423385242338534331011Clostridium botulinum B1 str. Okra, complete genomefoldase protein7e-0752.8
NC_014315:1463383:1463383146338314653051923Nitrosococcus watsoni C-113 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase7e-0752.8
NC_016510:1072709:1088029108802910899841956Flavobacterium columnare ATCC 49512 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase6e-0752.8
NC_015656:2433370:2453370245337024545451176Frankia symbiont of Datisca glomerata chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-0652
NC_013166:1409790:142975314297531430571819Kangiella koreensis DSM 16069, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase1e-0651.6
NC_013960:804567:8045678045678064801914Nitrosococcus halophilus Nc4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase2e-0651.2
NC_009483:2993818:301795230179523018932981Geobacter uraniireducens Rf4 chromosome, complete genomePpiC-type peptidyl-prolyl cis-trans isomerase3e-0650.8