Pre_GI: BLASTP Hits

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Query: NC_004129:1848701:1853797 Pseudomonas fluorescens Pf-5, complete genome

Start: 1853797, End: 1854564, Length: 768

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:1735595:173754017375401738325786Pseudomonas fluorescens PfO-1, complete genomeflagellar biosynthesis protein4e-111400
NC_010501:4080937:409588040958804096656777Pseudomonas putida W619, complete genomeflagellar biosynthetic protein FliR6e-96350
NC_017986:4374979:437995243799524380728777Pseudomonas putida ND6 chromosome, complete genomeflagellar biosynthesis protein FliR7e-91333
NC_009512:1691930:169690316969031697679777Pseudomonas putida F1, complete genomeflagellar biosynthetic protein FliR7e-91333
NC_002947:4931476:494658249465824947358777Pseudomonas putida KT2440, complete genomeflagellar biosynthesis protein2e-87321
NC_014366:1814000:183494918349491835728780Gamma proteobacterium HdN1, complete genomeFlagellar biosynthesis protein FliR4e-48191
NC_013851:3300278:330354133035413304323783Allochromatium vinosum DSM 180 chromosome, complete genomeflagellar biosynthetic protein FliR2e-44179
NC_009654:3849774:387610238761023876884783Marinomonas sp. MWYL1, complete genomeflagellar biosynthetic protein FliR3e-44178
NC_019940:293476:300920300920301693774Thioflavicoccus mobilis 8321 chromosome, complete genomeflagellar biosynthetic protein FliR2e-41169
NC_014562:1844268:187554118755411876326786Pantoea vagans C9-1 chromosome, complete genomeFlagellar biosynthetic protein fliR9e-29127
NC_009792:2688747:268874726887472689520774Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-26118
NC_013892:2689645:269080526908052691587783Xenorhabdus bovienii SS-2004 chromosome, complete genomeflagellar biosynthetic protein, regulator1e-23110
NC_009381:522731:550850550850551623774Yersinia pestis Pestoides F chromosome, complete genomeflagellar assembly protein5e-23107
NC_003143:741169:770010770010770783774Yersinia pestis CO92, complete genomeputative flagellar assembly protein5e-23107
NC_008149:650706:678873678873679646774Yersinia pestis Nepal516, complete genomeflagellar assembly protein5e-23107
NC_005810:3333000:336121233612123361985774Yersinia pestis biovar Microtus str. 91001, complete genomeflagellar biosynthetic protein FliR5e-23107
NC_009012:574145:595409595409596194786Clostridium thermocellum ATCC 27405, complete genometype III secretion system inner membrane R protein7e-23107
NC_004344:26828:550395503955815777Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein4e-22105
NC_020911:2921925:294200629420062942833828Octadecabacter antarcticus 307, complete genomeflagellar biosynthetic protein FliR3e-21102
NC_010515:1618093:165436216543621655159798Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceflagellar biosynthetic protein FliR4e-21101
NC_014377:1089894:108913310891331089897765Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar biosynthetic protein FliR7e-2097.8
NC_013223:685628:707734707734708516783Desulfohalobium retbaense DSM 5692, complete genomeflagellar biosynthetic protein FliR4e-1995.1
NC_007759:1356439:135849013584901359269780Syntrophus aciditrophicus SB, complete genomeflagellar biosynthetic protein4e-1685.5
NC_000918:1353310:137854913785491379325777Aquifex aeolicus VF5, complete genomeflagellar biosynthetic protein FliR6e-1684.7
NC_018664:1663324:166832816683281669122795Clostridium acidurici 9a chromosome, complete genomeflagellar biosynthesis protein FliR5e-1581.6
NC_014652:628435:650982650982651764783Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar biosynthetic protein flir5e-1581.6
NC_020409:168916:186269186269187060792Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeFlagellar biosynthetic protein fliR1e-1480.1
NC_021182:2883716:2896408289640828982371830Clostridium pasteurianum BC1, complete genomeflagellar biosynthetic protein FlhB/flagellar biosynthetic protein FliR3e-1479
NC_012791:2386000:240507724050772405796720Variovorax paradoxus S110 chromosome 1, complete genometype III secretion system inner membrane R protein5e-1478.2
NC_014366:2513352:251499225149922515783792Gamma proteobacterium HdN1, complete genomeType III secretory pathway protein5e-1478.2
NC_008346:983816:984925984925985686762Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeflagellar biosynthetic protein FliR1e-1377
NC_017243:1499757:150607415060741506835762Brachyspira intermedia PWS/A chromosome, complete genomeflagellar biosynthetic protein fliR1e-1377
NC_012225:377441:381131381131381892762Brachyspira hyodysenteriae WA1, complete genomeflagellar biosynthetic protein fliR2e-1376.6
NC_014150:233194:249501249501250304804Brachyspira murdochii DSM 12563 chromosome, complete genomeflagellar biosynthetic protein FliR3e-1375.5
NC_009253:2615777:261684126168412617608768Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar biosynthesis protein FliR6e-1374.7
NC_016894:2931213:293522829352282935983756Acetobacterium woodii DSM 1030 chromosome, complete genomeflagellar biosynthesis protein FliR1e-1273.6
NC_015391:2059191:207640620764062077098693Carnobacterium sp. 17-4 chromosome, complete genomeflagellar biosynthesis protein FliR2e-1272.8
NC_019908:852230:867123867123867926804Brachyspira pilosicoli P43/6/78 chromosome, complete genomeflagellar biosynthesis protein FliR2e-1272.8
NC_018607:1134900:113600211360021136805804Brachyspira pilosicoli B2904 chromosome, complete genomeflagellar biosynthetic protein FliR2e-1272.8
NC_018604:1329228:133032913303291331132804Brachyspira pilosicoli WesB complete genomeflagellar biosynthesis protein FliR2e-1272.8
NC_014330:2409559:241229724122972413058762Brachyspira pilosicoli 95/1000 chromosome, complete genomeflagellar biosynthesis protein FliR4e-1272
NC_021184:2238500:225729222572922258059768Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar biosynthetic protein FliR5e-1271.6
NC_010674:858397:8725658725658744061842Clostridium botulinum B str. Eklund 17B, complete genomeflagellar biosynthetic protein1e-1170.1
NC_010723:833870:8508728508728527041833Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar biosynthetic protein2e-1170.1
NC_008576:4701930:107331073311533801Magnetococcus sp. MC-1, complete genomeflagellar biosynthetic protein FliR4e-1168.6
NC_011126:555483:589051589051589827777Hydrogenobaculum sp. Y04AAS1, complete genometype III secretion system inner membrane R protein6e-1167.8
NC_009617:4911595:4913794491379449156351842Clostridium beijerinckii NCIMB 8052 chromosome, complete genomebifunctional flagellar biosynthesis protein FliR/FlhB4e-1065.5
NC_016893:43234:562395623957015777Wigglesworthia glossinidia endosymbiont of Glossina morsitansflagellar export pore protein1e-0963.5
NC_009802:1525144:155836215583621559123762Campylobacter concisus 13826, complete genomeflagellar biosynthetic protein FliR2e-0859.3
NC_020291:4903981:4924711492471149265491839Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeflagellar biosynthetic protein FlhB4e-0858.9
NC_014926:1381152:141077914107791411558780Thermovibrio ammonificans HB-1 chromosome, complete genomeflagellar biosynthetic protein FliR5e-0858.5
NC_014328:1135854:1144086114408611459061821Clostridium ljungdahlii ATCC 49587 chromosome, complete genomebifunctional flagellar biosynthesis proteins FliR/FlhB6e-0858.2
NC_016901:2661971:266197126619712662771801Shewanella baltica OS678 chromosome, complete genometype III secretion protein SpaR/YscT/HrcT7e-0857.8
NC_009997:2699644:270205427020542702854801Shewanella baltica OS195, complete genometype III secretion protein SpaR/YscT/HrcT7e-0857.8
NC_013971:1660144:168608816860881686858771Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein2e-0756.2
NC_013961:1622616:164856016485601649330771Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaR2e-0756.2
NC_009698:2649453:2649453264945326512821830Clostridium botulinum A str. Hall chromosome, complete genomebifunctional flagellar biosynthesis protein FliR/FlhB3e-0755.8
NC_014560:171931:176676176676177443768Helicobacter pylori SJM180 chromosome, complete genomeflagellar biosynthesis protein FliR4e-0755.5
NC_010520:2860960:2860960286096028627891830Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar biosynthetic protein FliR/FlhB4e-0755.5
NC_012214:2221702:224179622417962242566771Erwinia pyrifoliae Ep1/96, complete genomeSurface presentation of antigens protein (Spa29 protein), Type III secretion apparatus5e-0754.7
NC_015500:1337180:135676713567671357606840Treponema brennaborense DSM 12168 chromosome, complete genomeflagellar biosynthetic protein FliR7e-0754.3
NC_013971:2876733:289699928969992897763765Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein8e-0754.3
NC_013961:851044:873537873537874301765Erwinia amylovora, complete genomeSurface presentation of antigens protein spaR8e-0754.3
NC_010694:2971170:299086429908642991628765Erwinia tasmaniensis, complete genomeSurface presentation of antigens protein (Spa29 protein), Type III secretion apparatus2e-0653.1
AP010958:3669500:370620037062003706976777Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscT2e-0652.8
NC_013353:3669500:370620037062003706976777Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscT2e-0652.8
NC_013361:5319497:533690553369055337681777Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscT2e-0652.8
NC_015858:1150446:117293811729381173705768Brucella pinnipedialis B2/94 chromosome chromosome 2, completeflagellar biosynthesis protein FliR3e-0652.4
NC_010104:1096081:111881711188171119584768Brucella canis ATCC 23365 chromosome II, complete sequenceflagellar biosynthetic protein FliR3e-0652.4
NC_004311:1096649:111938511193851120152768Brucella suis 1330 chromosome II, complete sequenceflagellar biosynthesis protein3e-0652.4
NC_013118:1109610:113232211323221133089768Brucella microti CCM 4915 chromosome 2, complete genomeflagellar biosynthesis protein FliR3e-0652.4
NC_010694:2138000:215439321543932155121729Erwinia tasmaniensis, complete genomeType III secretion apparatus4e-0652
NC_010067:1507823:151635415163541517133780Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-0651.6
NC_009664:533021:536377536377537201825Kineococcus radiotolerans SRS30216, complete genomeflagellar biosynthetic protein FliR6e-0651.2
NC_011601:4096427:413005341300534130829777Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscT8e-0650.8