Pre_GI: BLASTP Hits

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Query: NC_003305:1035342:1036216 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1036216, End: 1037760, Length: 1545

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1019674:1036996103699610385401545Agrobacterium tumefaciens str. C58 chromosome linear, completehistidine ammonia-lyase0985
NC_006677:1255079:1274458127445812760051548Gluconobacter oxydans 621H, complete genomehistidine ammonia-lyase5e-157554
NC_006138:2683545:2685783268578326873211539Desulfotalea psychrophila LSv54, complete genomehistidine ammonia-lyase1e-144513
NC_004347:103967:1065361065361080771542Shewanella oneidensis MR-1, complete genomehistidine ammonia-lyase3e-140498
NC_007952:3283394:3300706330070633022411536Burkholderia xenovorans LB400 chromosome 2, complete sequenceHistidine ammonia-lyase2e-136486
NC_010694:2492378:2510096251009625116461551Erwinia tasmaniensis, complete genomeHistidine ammonia-lyase3e-136485
NC_015224:4426167:4427855442785544293901536Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,histidine ammonia-lyase7e-135481
NC_010465:62348:8657186571881031533Yersinia pseudotuberculosis YPIII, complete genomehistidine ammonia-lyase2e-134479
NC_014532:1713987:1713987171398717156271641Halomonas elongata DSM 2581, complete genomehistidine ammonia-lyase6e-132471
NC_008095:4032412:4042948404294840444741527Myxococcus xanthus DK 1622, complete genomehistidine ammonia-lyase5e-120431
NC_017030:5874824:5883006588300658845351530Corallococcus coralloides DSM 2259 chromosome, complete genomehistidine ammonia-lyase8e-117421
NC_014623:4788768:4803732480373248052641533Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehistidine ammonia-lyase2e-115416
NC_010718:3039434:3050122305012230516451524Natranaerobius thermophilus JW/NM-WN-LF, complete genomehistidine ammonia-lyase3e-113409
NC_014551:3797047:3814133381413338156741542Bacillus amyloliquefaciens DSM 7, complete genomehistidine ammonia-lyase (histidase)3e-112405
NC_017190:3812065:3829158382915838306961539Bacillus amyloliquefaciens LL3 chromosome, complete genomehistidine ammonia-lyase3e-112405
NC_020272:162779:1644401644401659781539Bacillus amyloliquefaciens IT-45, complete genomehistidine ammonia-lyase2e-111403
NC_014328:2326930:2337871233787123393941524Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehistidine ammonia-lyase1e-111403
NC_017191:3766960:3784029378402937855671539Bacillus amyloliquefaciens XH7 chromosome, complete genomehistidine ammonia-lyase6e-111401
NC_017188:3764061:3782337378233737838751539Bacillus amyloliquefaciens TA208 chromosome, complete genomehistidine ammonia-lyase6e-111401
NC_013939:913890:9336529336529352171566Deferribacter desulfuricans SSM1, complete genomehistidine ammonia-lyase2e-110399
NC_015318:1583839:1596723159672315982731551Hippea maritima DSM 10411 chromosome, complete genomehistidine ammonia-lyase3e-105382
NC_007350:1:1109811098125971500Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,histidine ammonia-lyase6e-104378
NC_016779:3418538:3426522342652234280391518Bacillus cereus F837/76 chromosome, complete genomehistidine ammonia-lyase2e-102373
NC_005945:3415135:3415135341513534166521518Bacillus anthracis str. Sterne, complete genomehistidine ammonia-lyase5e-102372
NC_003997:3414441:3414441341444134159581518Bacillus anthracis str. Ames, complete genomehistidine ammonia-lyase5e-102372
NC_007530:3414568:3414568341456834160851518Bacillus anthracis str. 'Ames Ancestor', complete genomehistidine ammonia-lyase5e-102372
NC_012581:803456:8226538226538241701518Bacillus anthracis str. CDC 684 chromosome, complete genomehistidine ammonia-lyase5e-102372
NC_011773:3496873:3496873349687334983901518Bacillus cereus AH820 chromosome, complete genomehistidine ammonia-lyase3e-102372
NC_014335:3408081:3408081340808134095981518Bacillus cereus biovar anthracis str. CI chromosome, completehistidine ammonia-lyase3e-102372
NC_016771:3386660:3388342338834233898591518Bacillus cereus NC7401, complete genomehistidine ammonia-lyase3e-102372
NC_010617:2626000:2630547263054726320761530Kocuria rhizophila DC2201, complete genomehistidine ammonia-lyase3e-101369
NC_007296:1762000:1774052177405217757071656Streptococcus pyogenes MGAS6180, complete genomehistidine ammonia-lyase4e-101369
NC_008148:583030:6054846054846070131530Rubrobacter xylanophilus DSM 9941, complete genomehistidine ammonia-lyase4e-101369
NC_013062:421779:4376834376834391701488Flavobacteriaceae bacterium 3519-10, complete genomeHistidine ammonia-lyase1e-100367
NC_014614:6115:3545035450369851536Clostridium sticklandii, complete genomeHistidine ammonia-lyase (Histidase)2e-99363
NC_008700:1994829:1995924199592419974171494Shewanella amazonensis SB2B, complete genomeHistidine ammonia-lyase1e-98360
NC_015571:1495286:1495880149588014973731494Porphyromonas gingivalis TDC60, complete genomehistidine ammonia-lyase9e-98357
NC_002950:353549:3576793576793591721494Porphyromonas gingivalis W83, complete genomehistidine ammonia-lyase9e-98357
NC_010729:1818500:1832791183279118342841494Porphyromonas gingivalis ATCC 33277, complete genomehistidine ammonia-lyase1e-97357
NC_009615:4425500:4457297445729744587931497Parabacteroides distasonis ATCC 8503 chromosome, complete genomehistidine ammonia-lyase2e-96353
NC_014831:149626:1475691475691496292061Thermaerobacter marianensis DSM 12885 chromosome, complete genomehistidine ammonia-lyase8e-87321
NC_011283:3177350:3200300320030032017991500Klebsiella pneumoniae 342 chromosome, complete genomehistidine ammonia-lyase5e-84311
NC_016887:221788:2249642249642265441581Nocardia cyriacigeorgica GUH-2, complete genomehistidine ammonia-lyase6e-83308
NC_009953:2388605:2407658240765824092651608Salinispora arenicola CNS-205 chromosome, complete genomehistidine ammonia-lyase4e-82305
NC_014656:1829336:1865864186586418674171554Bifidobacterium longum subsp. longum BBMN68 chromosome, completehuth2e-81303
NC_015067:2136048:2136048213604821376011554Bifidobacterium longum subsp. longum JCM 1217, complete genomehistidine ammonia-lyase2e-81303
NC_015052:2181514:2181514218151421830671554Bifidobacterium longum subsp. infantis 157F, complete genomehistidine ammonia-lyase2e-81303
NC_013744:349297:3673073673073689981692Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completehistidine ammonia-lyase3e-71269
NC_011283:1811000:1861634186163418632171584Klebsiella pneumoniae 342 chromosome, complete genomehistidine ammonia-lyase3e-66253
NC_009614:1328050:1345560134556013471311572Bacteroides vulgatus ATCC 8482 chromosome, complete genomehistidine ammonia-lyase4e-66252
NC_014976:759129:7723397723397739461608Bacillus subtilis BSn5 chromosome, complete genomeHistidine ammonia-lyase8e-65248
NC_014166:2319447:2317930231793023194501521Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeHistidine ammonia-lyase2e-64247
NC_008800:3279468:3291534329153432931291596Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative phenylalanine and histidine ammonia-lyase6e-63241
NC_014718:630188:6401046401046416781575Burkholderia rhizoxinica HKI 454 chromosome, complete genomeHistidine ammonia-lyase2e-62240
NC_015224:1440283:1444858144485814464531596Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative phenylalanine and histidine ammonia-lyase3e-62239
NC_016610:795903:8023038023038038501548Tannerella forsythia ATCC 43037 chromosome, complete genomephenylalanine and histidine ammonia-lyase6e-62238
NC_016830:530397:5580465580465595901545Pseudomonas fluorescens F113 chromosome, complete genomehistidine ammonia-lyase7e-58225
NC_009376:1335074:1340102134010213415051404Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomehistidine ammonia-lyase1e-53211
NC_016885:603269:6147556147556161581404Pyrobaculum oguniense TE7 chromosome, complete genomehistidine ammonia-lyase3e-53209
NC_016645:985802:9983249983249997241401Pyrobaculum sp. 1860 chromosome, complete genomehistidine ammonia-lyase1e-51204
NC_009092:2644164:2662512266251226641701659Shewanella loihica PV-4, complete genomephenylalanine/histidine ammonia-lyase4e-40166
NC_009792:2688747:2709149270914927106931545Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein8e-40165
NC_009076:2027478:2028818202881820304521635Burkholderia pseudomallei 1106a chromosome I, complete sequencephenylalanine/histidine ammonia-lyase family protein5e-29129
NC_006350:1938631:1955029195502919566631635Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative exported histidine ammonia-lyase8e-29128
NC_007434:2424884:2427901242790124295351635Burkholderia pseudomallei 1710b chromosome I, complete sequencePhenylalanine and histidine ammonia-lyase1e-28128
NC_004347:3437369:3443759344375934454081650Shewanella oneidensis MR-1, complete genomePal/histidase family protein7e-25115
NC_016582:2009588:2015022201502220160351014Streptomyces bingchenggensis BCW-1 chromosome, complete genomehistidine ammonia-lyase6e-1375.9