Pre_GI Gene

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Host: NC_007952 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007952:3283394 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
32828983283401504putative Carbon monoxide dehydrogenase small chain CutCQuickGO ontologyBLASTP
328339432857422349Carbon-monoxide dehydrogenaseQuickGO ontologyBLASTP
328575832866609032-hydroxy-3-oxopropionate reductaseQuickGO ontologyBLASTP
32866473287387741Putative Carbon monoxide dehydrogenase subunit GQuickGO ontologyBLASTP
328747532886171143outer membrane porin OmpC familyQuickGO ontologyBLASTP
32886463288975330hypothetical proteinBLASTP
328904432901981155Peptidase M20D amidohydrolaseQuickGO ontologyBLASTP
32906573291181525hypothetical protein
32918303292747918ABC nickel transporter ATPase subunitQuickGO ontologyBLASTP
329278032938081029ABC nickel transporter ATPase subunitQuickGO ontologyBLASTP
32938083294704897ABC nickel transporter inner membrane subunitQuickGO ontologyBLASTP
32947063295653948ABC nickel transporter inner membrane subunitQuickGO ontologyBLASTP
329569232972271536ABC nickel transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
329742432985631140outer membrane porin OmpC familyQuickGO ontologyBLASTP
32985943298950357hypothetical proteinBLASTP
329902833005331506hypothetical proteinBLASTP
330070633022411536Histidine ammonia-lyaseQuickGO ontologyBLASTP
33023073303254948putative vanillate O-demethylase oxidoreductaseQuickGO ontologyBLASTP
33033763304356981Transcriptional regulator AraC familyQuickGO ontologyBLASTP
33049523305554603Membrane-associated phospholipid phosphataseQuickGO ontologyBLASTP
330558233067931212major facilitator superfamily MFS transporterQuickGO ontologyBLASTP
330775633087781023putative transposaseQuickGO ontologyBLASTP
33088583309166309hypothetical protein
330924733105061260heavy metalH antiporter CDF familyQuickGO ontologyBLASTP
33105153310790276hypothetical proteinBLASTP
33109183311421504hypothetical protein
33117663312557792hypothetical protein
33126543312920267hypothetical protein
33130913313330240hypothetical protein
33134363313729294hypothetical protein
33137443314040297Transcriptional regulator XRE familyQuickGO ontologyBLASTP
33147733315504732hypothetical proteinBLASTP
33159333316799867Transcriptional regulator IclR familyQuickGO ontologyBLASTP
331687033181051236major facilitator superfamily MFS transporterQuickGO ontologyBLASTP
33181023318620519hypothetical proteinBLASTP
33186813319154474hypothetical proteinBLASTP
33192763320106831putative alphabeta hydrolaseQuickGO ontologyBLASTP