Pre_GI: OUP Neighbours

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Query: NC_011149:361765 Salmonella enterica subsp. enterica serovar Agona str. SL483,

D: 36.5643

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 55




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome77.8431 %Subject ←→ Query33.4286
NC_013282:646569Cronobacter turicensis, complete genome76.5288 %Subject ←→ Query30.8062
NC_013282:3719500*Cronobacter turicensis, complete genome77.9933 %Subject ←→ Query31.6817
NC_013282:3216226*Cronobacter turicensis, complete genome76.5074 %Subject ←→ Query41.2788
NC_013282:1256769Cronobacter turicensis, complete genome79.1115 %Subject ←→ Query38.8742
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome79.4332 %Subject ←→ Query32.164
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome75.7721 %Subject ←→ Query37.5286
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome75.6801 %Subject ←→ Query37.9513
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome75.2819 %Subject ←→ Query37.8586
NC_012880:2778795Dickeya dadantii Ech703, complete genome77.7911 %Subject ←→ Query36.5333
NC_012880:3645304Dickeya dadantii Ech703, complete genome76.9455 %Subject ←→ Query33.3293
NC_012912:777592*Dickeya zeae Ech1591, complete genome77.4969 %Subject ←→ Query33.9737
NC_012912:4737703Dickeya zeae Ech1591, complete genome75.7384 %Subject ←→ Query29.5142
NC_012912:2800884*Dickeya zeae Ech1591, complete genome75.7445 %Subject ←→ Query31.095
NC_012912:1229333Dickeya zeae Ech1591, complete genome76.0478 %Subject ←→ Query32.2592
NC_013508:2356865*Edwardsiella tarda EIB202, complete genome75.049 %Subject ←→ Query44.5077
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome82.6869 %Subject ←→ Query31.6444
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome78.1281 %Subject ←→ Query30.6937
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.1103 %Subject ←→ Query45.4902
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome78.5263 %Subject ←→ Query36.7583
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome75.9681 %Subject ←→ Query35.1593
NC_009778:1141716Enterobacter sakazakii ATCC BAA-894, complete genome76.6085 %Subject Query48.5924
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.9161 %Subject ←→ Query36.6454
NC_010694:614985Erwinia tasmaniensis, complete genome77.3989 %Subject ←→ Query35.5876
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome80.9283 %Subject ←→ Query43.5401
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.7567 %Subject ←→ Query31.1132
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.443 %Subject ←→ Query32.6958
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.4473 %Subject ←→ Query31.405
NC_013421:1038500Pectobacterium wasabiae WPP163, complete genome75.3983 %Subject ←→ Query35.7825
NC_013421:1954915*Pectobacterium wasabiae WPP163, complete genome75.1869 %Subject ←→ Query32.6483
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete83.0821 %Subject ←→ Query31.5722
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.4675 %Subject ←→ Query35.8098
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.0895 %Subject ←→ Query35.7065
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,77.405 %Subject ←→ Query31.5601
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,79.1115 %Subject ←→ Query37.9381
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str75.8854 %Subject ←→ Query35.749
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str76.9853 %Subject ←→ Query39.786
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,77.6011 %Subject ←→ Query32.4599
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,75.4994 %Subject ←→ Query36.512
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,77.0833 %Subject ←→ Query39.4334
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,95.2574 %Subject ←→ Query37.0114
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.049 %Subject ←→ Query36.3874
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.9473 %Subject ←→ Query31.1345
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.598 %Subject ←→ Query38.4606
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.4969 %Subject ←→ Query32.0708
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,82.7819 %Subject ←→ Query32.0373
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.4504 %Subject ←→ Query33.8947
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.7874 %Subject ←→ Query32.5632
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,82.0925 %Subject ←→ Query31.0494
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.7996 %Subject ←→ Query38.1505
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.8885 %Subject ←→ Query32.0647
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete82.0925 %Subject ←→ Query30.7575
NC_003197:3971905Salmonella typhimurium LT2, complete genome77.3162 %Subject ←→ Query32.0829
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome76.1213 %Subject ←→ Query37.0845
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome75.3952 %Subject ←→ Query32.276