Pre_GI: OUP Neighbours

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Query: NC_007604:168176 Synechococcus elongatus PCC 7942, complete genome

D: 28.1524

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

Number of Neighbours: 34




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004578:20738Pseudomonas syringae pv. tomato str. DC3000, complete genome76.6667 %Subject ←→ Query27.4072
NC_007604:1183497Synechococcus elongatus PCC 7942, complete genome82.8278 %Subject ←→ Query28.0399
NC_012660:2684981Pseudomonas fluorescens SBW25 chromosome, complete genome77.2457 %Subject ←→ Query28.2792
NC_006576:414696Synechococcus elongatus PCC 6301, complete genome82.7206 %Subject ←→ Query29.5841
NC_002947:4994335Pseudomonas putida KT2440, complete genome75.2757 %Subject ←→ Query29.604
NC_006576:1435422Synechococcus elongatus PCC 6301, complete genome92.1324 %Subject ←→ Query31.0329
NC_007005:1636875Pseudomonas syringae pv. syringae B728a, complete genome75.3125 %Subject ←→ Query31.3458
NC_004578:5336773*Pseudomonas syringae pv. tomato str. DC3000, complete genome75.4136 %Subject ←→ Query31.4169
NC_005773:866157*Pseudomonas syringae pv. phaseolicola 1448A, complete genome75.7047 %Subject ←→ Query31.8962
NC_002947:2157648Pseudomonas putida KT2440, complete genome75.3401 %Subject ←→ Query32.1856
NC_006576:2610565*Synechococcus elongatus PCC 6301, complete genome81.2316 %Subject ←→ Query32.4351
NC_007604:1442500Synechococcus elongatus PCC 7942, complete genome81.2837 %Subject ←→ Query33.1617
NC_007604:1383192*Synechococcus elongatus PCC 7942, complete genome77.2917 %Subject ←→ Query33.2502
NC_006576:161112Synechococcus elongatus PCC 6301, complete genome78.9491 %Subject ←→ Query33.8572
NC_007604:1586243*Synechococcus elongatus PCC 7942, complete genome81.5656 %Subject ←→ Query33.923
NC_006576:2683467Synechococcus elongatus PCC 6301, complete genome80.2022 %Subject ←→ Query34.6581
NC_006576:2073163Synechococcus elongatus PCC 6301, complete genome80.3676 %Subject ←→ Query35.0481
NC_007604:1875268*Synechococcus elongatus PCC 7942, complete genome82.9381 %Subject ←→ Query35.572
NC_006576:217697Synechococcus elongatus PCC 6301, complete genome80.53 %Subject ←→ Query35.6639
NC_007604:2213659Synechococcus elongatus PCC 7942, complete genome81.6513 %Subject ←→ Query35.9302
NC_006576:12230*Synechococcus elongatus PCC 6301, complete genome80.4933 %Subject ←→ Query36.2947
NC_006576:1743500*Synechococcus elongatus PCC 6301, complete genome79.6324 %Subject ←→ Query36.7017
NC_007604:1967770Synechococcus elongatus PCC 7942, complete genome83.7898 %Subject ←→ Query37.3099
NC_007005:4515853Pseudomonas syringae pv. syringae B728a, complete genome75.242 %Subject ←→ Query37.5214
NC_006576:2423250Synechococcus elongatus PCC 6301, complete genome81.2745 %Subject ←→ Query37.6034
NC_006576:2328427Synechococcus elongatus PCC 6301, complete genome82.163 %Subject ←→ Query37.7448
NC_007604:2555000*Synechococcus elongatus PCC 7942, complete genome79.1636 %Subject ←→ Query37.9152
NC_007604:1145373*Synechococcus elongatus PCC 7942, complete genome81.348 %Subject Query38.5822
NC_006576:456569*Synechococcus elongatus PCC 6301, complete genome82.2181 %Subject Query39.2636
NC_016002:1975000*Pseudogulbenkiania sp. NH8B, complete genome76.6789 %Subject Query40.685
NC_007516:413159*Synechococcus sp. CC9605, complete genome75.7935 %Subject Query42.2379
NC_007604:41495Synechococcus elongatus PCC 7942, complete genome77.6409 %Subject Query44.7466
NC_007604:743738*Synechococcus elongatus PCC 7942, complete genome82.2488 %Subject Query45.8397
NC_007516:2277910*Synechococcus sp. CC9605, complete genome76.4461 %Subject Query50.5095