Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1442500 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14425041443418915histone deacetylaseAcuCAphA family protein-likeQuickGO ontologyBLASTP
144354614453091764PDZDHRGLGFQuickGO ontologyBLASTP
14453061445725420hypothetical proteinBLASTP
14457431446000258hypothetical proteinBLASTP
144619114475191329hypothetical proteinBLASTP
144784714500692223Cellulose synthase UDP-formingQuickGO ontologyBLASTP
145008714512411155hypothetical proteinBLASTP
145125514523761122Endo-14-beta-xylanaseQuickGO ontologyBLASTP
14527271453104378hypothetical proteinBLASTP
145331714545761260hypothetical proteinBLASTP
14545931455369777Hydroxyacylglutathione hydrolaseQuickGO ontologyBLASTP
14553951456084690two component transcriptional regulator winged helix familyQuickGO ontologyBLASTP
14562601456787528hypothetical proteinBLASTP
145680314579091107ATPaseQuickGO ontologyBLASTP
145805714596881632ironIII ABC transporter permease proteinQuickGO ontologyBLASTP
14599141460555642membrane-associated proteinQuickGO ontologyBLASTP
146084714618691023iron transport system substrate-binding proteinQuickGO ontologyBLASTP
1461949146357116232-isopropylmalate synthaseQuickGO ontologyBLASTP