Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1145373 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
114537311468421470putative modulator of DNA gyrase TldDQuickGO ontologyBLASTP
114734911484371089hypothetical proteinBLASTP
11485401149388849hypothetical proteinBLASTP
114944511512591815protein serinethreonine phosphataseQuickGO ontologyBLASTP
11513981151619222ferredoxin-thioredoxin reductase variable subunitQuickGO ontologyBLASTP
115167011533731704hypothetical proteinBLASTP
115341511555592145ATPaseQuickGO ontologyBLASTP
11556541155962309hypothetical protein
11574131157931519cation transporterQuickGO ontologyBLASTP
115802711606242598PBS lyase HEAT-like repeatQuickGO ontologyBLASTP
11607621161508747conserved hypothetical protein YCF23QuickGO ontologyBLASTP
116158011625901011conserved hypothetical protein YCF62QuickGO ontologyBLASTP
116256511642351671hypothetical proteinBLASTP
116435011661071758hypothetical proteinBLASTP
11661261166812687hypothetical proteinBLASTP
116694911685261578methionyl-tRNA synthetaseQuickGO ontologyBLASTP