Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1967770 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
19677701968582813hypothetical proteinBLASTP
196865419698981245arginine biosynthesis bifunctional protein ArgJQuickGO ontologyBLASTP
19699311970821891putative transcripton factor DevT-likeQuickGO ontologyBLASTP
1970822197222814073-isopropylmalate dehydratase large subunitQuickGO ontologyBLASTP
19722901972778489hypothetical proteinBLASTP
19728321973413582Deoxycytidine triphosphate deaminaseQuickGO ontologyBLASTP
197345819758392382putative glycosyltransferaseQuickGO ontologyBLASTP
197593219769781047putative glycosyltransferaseQuickGO ontologyBLASTP
197698319781131131hypothetical proteinBLASTP
197812919794541326hemolysin secretion protein-likeQuickGO ontologyBLASTP
197949619824983003cyclic nucleotide-binding domain cNMP-BD proteinQuickGO ontologyBLASTP
19825131983253741hypothetical proteinBLASTP
198341719844931077Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclaseQuickGO ontologyBLASTP
19846471985081435hypothetical proteinBLASTP
19851421985738597hypothetical proteinBLASTP
198574119863796393-octaprenyl-4-hydroxybenzoate carboxy-lyaseQuickGO ontologyBLASTP
198637619886132238Cold shock proteinQuickGO ontologyBLASTP
19889311989605675PhoUQuickGO ontologyBLASTP
1989729198981890photosystem I reaction center subunit XIIQuickGO ontology
19899751990358384hypothetical protein
19903941990852459hypothetical proteinBLASTP
19910201991412393chorismate mutaseQuickGO ontologyBLASTP
19914691992281813signal peptide peptidase SppA 36K typeQuickGO ontologyBLASTP
199236919934631095permease of the drugmetabolite transporterQuickGO ontologyBLASTP