Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:2213659 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
221365922147081050Cell wall hydrolaseautolysinQuickGO ontologyBLASTP
22147732215456684hypothetical protein
22154662216287822dihydrodipicolinate reductaseQuickGO ontologyBLASTP
221650822205634056Magnesium-chelatase subunit HQuickGO ontologyBLASTP
222193422229591026hypothetical proteinBLASTP
22236022224213612probable glutathione S-transferaseQuickGO ontologyBLASTP
22243112224742432hypothetical proteinBLASTP
22260312226495465hypothetical proteinBLASTP
22264682226803336probable translation initiation factor SUI1QuickGO ontologyBLASTP
222690822281701263tryptophan synthase beta subunitQuickGO ontologyBLASTP
22285292229017489nuclease SNase-likeQuickGO ontologyBLASTP
22290232229910888hypothetical proteinBLASTP
22300092230323315hypothetical protein
22303162230726411hypothetical proteinBLASTP
223082322318451023ATPaseQuickGO ontologyBLASTP
22318972232757861ABC-2 type transport system permease proteinQuickGO ontologyBLASTP
223297922340221044probable hydrolaseQuickGO ontologyBLASTP
223414122363542214Cellulose synthase UDP-formingQuickGO ontologyBLASTP
223638422376431260hypothetical proteinBLASTP