Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1183497 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
118349711860942598hypothetical proteinBLASTP
118608111892663186hypothetical proteinBLASTP
118930511924483144diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC and GAF sensorsQuickGO ontologyBLASTP
11927921193292501transcriptional regulator MarR familyQuickGO ontologyBLASTP
11933971194299903hypothetical proteinBLASTP
11943481194842495hypothetical proteinBLASTP
11948461195301456hypothetical proteinBLASTP
119531711964921176hypothetical proteinBLASTP
119741711988411425hypothetical proteinBLASTP
11988441199239396hypothetical proteinBLASTP
119943712007621326hypothetical proteinBLASTP
12007731201330558hypothetical proteinBLASTP
12013271202109783circadian phase modifier CpmAQuickGO ontologyBLASTP
120210212038651764oligopeptide-binding protein of oligopeptide ABC transporterQuickGO ontologyBLASTP
12038371204319483MECDP-synthaseQuickGO ontologyBLASTP
120459812061091512hypothetical proteinBLASTP