Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1383192 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
138319213851621971Acetate--CoA ligaseQuickGO ontologyBLASTP
13854121386080669hypothetical proteinBLASTP
138658713880831497putative export proteinQuickGO ontologyBLASTP
138810913908982790Two-component response regulatorQuickGO ontologyBLASTP
13908951391350456response regulator receiver domain protein CheY-likeQuickGO ontologyBLASTP
139134713967705424multi-sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
13970871397878792hypothetical proteinBLASTP
139829413994991206coenzyme F420 hydrogenaseQuickGO ontologyBLASTP
139974214010521311cell envelope-related function transcriptional attenuator common domainQuickGO ontologyBLASTP
1400759140083173tRNA-AlaQuickGO ontology
14010851401588504hypothetical proteinBLASTP