Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017249: Bradyrhizobium japonicum USDA 6, complete genome

NCBI: NC_017249

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1184934587227380Island text1.7138922.411921.2829Neighbours11BLASTN+18493.gbk
2602168132621111Island text1.659320.039921.8334Neighbours11BLASTN60216.gbk
326387328421020338Island text1.6107720.913219.7466Neighbours11BLASTN263873.gbk
4908500*94911940620Island text2.1595531.132527.2494Neighbours11BLASTN+908500.gbk
51476500*149509918600Island text1.5616824.499418.3234Neighbours11BLASTN1476500.gbk
62073558209609922542Island text2.2763727.66528.8235Neighbours11BLASTN2073558.gbk
72109843214661236770Island text1.46420.385529.2057Neighbours11BLASTN2109843.gbk
82572000259371721718Island text1.8215224.376724.2236Neighbours11BLASTN2572000.gbk
93119000314078121782Island text1.5959823.333420.8338Neighbours11BLASTN+3119000.gbk
103181976320149919524Island text1.5475619.955817.2785Neighbours11BLASTN3181976.gbk
113229500326483835339Island text1.5251319.28517.4544Neighbours11BLASTN3229500.gbk
123267500*329059123092Island text1.5068624.282619.0157Neighbours11BLASTN3267500.gbk
133406570342639519826Island text1.5421224.756320.5034Neighbours11BLASTN3406570.gbk
144365935438517619242Island text1.6482720.781916.6113Neighbours11BLASTN4365935.gbk
154398000442232924330Island text1.4985123.01527.1257Neighbours11BLASTN4398000.gbk
165255967*528109925133Island text1.6517725.407819.4564Neighbours11BLASTN5255967.gbk
177341428736532023893Island text1.7515921.523923.6433Neighbours11BLASTN7341428.gbk
187917586*799109973514Island text2.5654827.206631.0602Neighbours11BLASTN+7917586.gbk
1979937138107099113387Island text1.4537324.027220.2765Neighbours11BLASTN+7993713.gbk
208137586816096123376Island text1.7043621.727521.969Neighbours11BLASTN+8137586.gbk
218165826819959933774Island text1.6284522.555923.3404Neighbours11BLASTN8165826.gbk
228221992*827468652695Island text1.4806723.273324.0346Neighbours11BLASTN+8221992.gbk
238283701833271749017Island text1.5456422.898716.5877Neighbours11BLASTN+8283701.gbk
248358438837803319596Island text1.6736424.023522.2643Neighbours11BLASTN+8358438.gbk
258427163846935842196Island text1.5216921.683821.654Neighbours11BLASTN+8427163.gbk
268483159*850890825750Island text1.5400522.71117.8417Neighbours11BLASTN+8483159.gbk
278510121855259942479Island text1.5597623.874320.0628Neighbours11BLASTN8510121.gbk
288576294861603739744Island text1.4678423.267318.1325Neighbours11BLASTN+8576294.gbk
299155500917309917600Island text1.5781924.763921.7948Neighbours11BLASTN+9155500.gbk
309198000922199924000Island text1.8659925.618121.483Neighbours11BLASTN+9198000.gbk