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Query: NC_017249:3181976 Bradyrhizobium japonicum USDA 6, complete genome

Start: 3181976, End: 3201499, Length: 19524

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007778:3784104*3784104381456530462Rhodopseudomonas palustris HaA2, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007958:2423335*2423335244565022316Rhodopseudomonas palustris BisB5, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_004463:69241506924150696442440275Bradyrhizobium japonicum USDA 110, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_011004:2507566*2507566253137523810Rhodopseudomonas palustris TIE-1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011757:5693584*5693584571331619733Methylobacterium chloromethanicum CM4, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_016027:2047954*2047954211021762264Gluconacetobacter xylinus NBRC 3288, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010505:26576832657683268177424092Methylobacterium radiotolerans JCM 2831, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015186:36502*365025988323382Acidiphilium multivorum AIU301, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011894:983572983572101559932028Methylobacterium nodulans ORS 2060, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010508:18656021865602188921923618Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_010725:39619813961981398401922039Methylobacterium populi BJ001, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010725:3917369*3917369396168844320Methylobacterium populi BJ001, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008687:30245030245032509922650Paracoccus denitrificans PD1222 chromosome 2, complete sequence2e-0661.9BLASTN svgBLASTP svg