Pre_GI: BLASTP Hits

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Query: NC_017358:1342000:1357438 Helicobacter pylori Cuz20 chromosome, complete genome

Start: 1357438, End: 1358019, Length: 582

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017355:1299874:131643013164301317011582Helicobacter pylori v225d chromosome, complete genomehypothetical protein6e-99359
NC_017372:1373766:139019113901911390769579Helicobacter pylori India7 chromosome, complete genomehypothetical protein5e-87320
NC_017367:1333811:135030113503011350879579Helicobacter pylori F57, complete genomehypothetical protein9e-87319
NC_017371:1358000:137376413737641374345582Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein1e-86318
NC_011498:1345623:136220513622051362783579Helicobacter pylori P12, complete genomehypothetical protein6e-85313
NC_000921:1343701:136049213604921361070579Helicobacter pylori J99, complete genomehypothetical protein7e-85312
NC_017063:1362000:137765313776531378231579Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein5e-84310
NC_017376:1324000:133984013398401340418579Helicobacter pylori SNT49 chromosome, complete genomehypothetical protein3e-83307
NC_014560:1309470:132611313261131326697585Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein4e-83306
NC_017365:77150:812298122981816588Helicobacter pylori F30, complete genomehypothetical protein7e-80296
NC_017375:1317398:133384713338471334428582Helicobacter pylori 83 chromosome, complete genomehypothetical protein4e-79293
NC_017361:1303553:132031213203121320890579Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein1e-78292
NC_017368:1300000:131564013156401316221582Helicobacter pylori F16, complete genomehypothetical protein2e-78291
NC_008229:118000:122455122455123042588Helicobacter acinonychis str. Sheeba, complete genomehypothetical protein8e-74276