Pre_GI: BLASTP Hits

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Query: NC_016822:2341127:2358249 Shigella sonnei 53G, complete genome

Start: 2358249, End: 2359070, Length: 822

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:2251792:226888022688802269701822Shigella sonnei Ss046, complete genomemolybdate metabolism regulator, first fragment1e-148525
NC_011741:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)5e-134477
CP002185:2347413:2365067236506723688613795Escherichia coli W, complete genome5e-134477
CU928160:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)5e-134477
NC_009800:2225182:2238823223882322426173795Escherichia coli HS, complete genomemolybdate metabolism regulator6e-134476
NC_010468:1694729:1694729169472916985233795Escherichia coli ATCC 8739, complete genomeWGR domain protein6e-134476
NC_000913:2180855:219449621944962195320825Escherichia coli K12, complete genome2e-131468
NC_011745:2399313:2415694241569424194823789Escherichia coli ED1a chromosome, complete genomeputative Molybdate metabolism regulator (molR)2e-127455
NC_017328:2225418:224505722450572245674618Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-103374
NC_011750:955451:955451955451956011561Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-70265
NC_011750:955451:9522129522129554813270Escherichia coli IAI39 chromosome, complete genome4e-24111
NC_013008:2851342:286799628679962868724729Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator3e-23108
NC_011353:2852362:286901528690152869743729Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-23108
NC_002655:2925787:294243529424352943163729Escherichia coli O157:H7 EDL933, complete genomeputative regulator (fragment)3e-23108
NC_008258:2190635:2205080220508022083353256Shigella flexneri 5 str. 8401, complete genome7e-21100
NC_004741:2169877:2184286218428621901225837Shigella flexneri 2a str. 2457T, complete genome8e-21100
NC_011750:955451:9560249560249598303807Escherichia coli IAI39 chromosome, complete genomeputative molybdate metabolism protein1e-1996.7
NC_010473:2267851:2289309228930922929413633Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-1169.7
NC_000913:2180855:2198301219830122019333633Escherichia coli K12, complete genomehypothetical protein2e-1169.7
AC_000091:2185369:2203613220361322072453633Escherichia coli W3110 DNA, complete genomehypothetical protein2e-1169.7
NC_012759:2069326:2090784209078420944163633Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-1169.7
NC_009800:2225182:2242627224262722462593633Escherichia coli HS, complete genomemolybdate metabolism regulator MolR homolog2e-1169.3
NC_011741:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-1067
CU928160:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein1e-1067
CP002185:2347413:2368871236887123725033633Escherichia coli W, complete genomemolybdate metabolism regulator MolR-like protein2e-1066.6
NC_011745:2399313:2419492241949224231243633Escherichia coli ED1a chromosome, complete genomehypothetical protein4e-0962.4
NC_016822:1839739:184809118480911848417327Shigella sonnei 53G, complete genomeISSfl2 ORF6e-0961.6
NC_007607:87000:103259103259103561303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein5e-0961.6
NC_007613:4217557:4240173424017342411921020Shigella boydii Sb227, complete genomehypothetical protein2e-0860.1
NC_008258:4345400:4350843435084343522581416Shigella flexneri 5 str. 8401, complete genome2e-0859.7
NC_017328:1835108:184835918483591848667309Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-0859.3
NC_016776:2237404:2254510225451022555741065Bacteroides fragilis 638R, complete genomehypothetical protein7e-0858.2
NC_003228:2245181:2262074226207422631381065Bacteroides fragilis NCTC 9343, complete genomehypothetical protein2e-0756.6
NC_006347:2190000:2205818220581822068821065Bacteroides fragilis YCH46, complete genomehypothetical protein2e-0756.6