Pre_GI: BLASTP Hits

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Query: NC_010001:2836995:2843299 Clostridium phytofermentans ISDg, complete genome

Start: 2843299, End: 2844621, Length: 1323

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013172:466300:4769954769954783441350Brachybacterium faecium DSM 4810, complete genomemaltose-binding periplasmic protein6e-52205
NC_011741:1978500:1991452199145219927741323Escherichia coli IAI1 chromosome, complete genomeputative sugar ABC transporter maltose-binding protein CymE5e-42172
CU928160:1978500:1991452199145219927741323Escherichia coli IAI1 chromosome, complete genomeputative ABC-type sugar transport system, periplasmic component, Maltose binding protein (CymE protein precursor)5e-42172
NC_013364:2355298:2368219236821923694511233Escherichia coli O111:H- str. 11128, complete genomeputative sugar transporter subunit9e-42171
NC_013361:2591829:2604750260475026059821233Escherichia coli O26:H11 str. 11368 chromosome, complete genomesugar transporter subunit9e-42171
NC_010658:1933605:1943662194366219448941233Shigella boydii CDC 3083-94, complete genomemaltose/maltodextrin-binding periplasmic protein MalE1e-41171
NC_016593:956839:9657569657569670451290Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein6e-41168
NC_015637:891842:9023089023089035371230Vibrio anguillarum 775 chromosome chromosome II, complete sequencecyclodextrin-binding protein1e-38160
NC_013282:551219:5864045864045876541251Cronobacter turicensis, complete genomeCyclodextrin-binding protein1e-32141
NC_020207:1795993:1800440180044018016991260Enterococcus faecium NRRL B-2354, complete genomeMaltose, maltodextrin ABC transporter, substrate binding periplasmic protein MalE1e-32140
NC_020260:3355814:3355814335581433570371224Cronobacter sakazakii Sp291, complete genomecyclodextrin-binding protein3e-32140
NC_014829:4088494:4103947410394741052421296Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeextracellular solute-binding protein family 13e-32139
NC_017168:144000:1622271622271634621236Yersinia pestis A1122 chromosome, complete genomeputative sugar-binding protein3e-31136
NC_009381:720000:7382047382047394391236Yersinia pestis Pestoides F chromosome, complete genomesugar-binding protein3e-31136
NC_005810:4045303:4046770404677040480321263Yersinia pestis biovar Microtus str. 91001, complete genomeputative sugar-binding protein3e-31136
NC_015949:2327500:2342776234277623439811206Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomefamily 1 extracellular solute-binding protein2e-30133
NC_014721:135982:1387731387731399781206Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeextracellular solute-binding protein family 12e-30133
NC_012034:2676943:2709913270991327111181206Anaerocellum thermophilum DSM 6725, complete genomeextracellular solute-binding protein family 17e-29128
NC_014720:383587:3882193882193894241206Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 11e-28127
NC_014392:2350577:2367203236720323684081206Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeextracellular solute-binding protein family 12e-28127
NC_014657:2283176:2299123229912323003281206Caldicellulosiruptor owensensis OL chromosome, complete genomeextracellular solute-binding protein family 14e-28126
NC_015637:669593:6811046811046822851182Vibrio anguillarum 775 chromosome chromosome II, complete sequencemaltose/maltodextrin-binding protein5e-28125
NC_014652:325109:3297313297313309361206Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 12e-27124
NC_015977:2309873:2326834232683423280361203Roseburia hominis A2-183 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-27124
NC_009437:475817:4804424804424816471206Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular solute-binding protein7e-27122
NC_013642:574673:5924275924275936051179Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 12e-26120
NC_008095:6697789:6697789669778966999692181Myxococcus xanthus DK 1622, complete genomeputative sugar ABC transporter, permease protein/periplasmic sugar-binding protein3e-25116
NC_008261:2920999:2922039292203929232651227Clostridium perfringens ATCC 13124, complete genomeputative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein3e-25116
NC_017167:3013947:3024343302434330256261284Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1maltose binding protein4e-25116
NC_014221:2188250:2198858219885822000511194Truepera radiovictrix DSM 17093 chromosome, complete genomeextracellular solute-binding protein family 16e-25115
NC_013205:2922343:2933090293309029343671278Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,extracellular solute-binding protein family 15e-25115
NC_007760:4751000:4759345475934547605471203Anaeromyxobacter dehalogenans 2CP-C, complete genomeABC sugar transporter, periplasmic ligand binding protein2e-24114
NC_011145:4797548:4807758480775848089601203Anaeromyxobacter sp. K, complete genomeextracellular solute-binding protein family 12e-24114
NC_020126:7661551:7665209766520976673832175Myxococcus stipitatus DSM 14675, complete genomeputative sugar ABC transporter permease/periplasmic sugar-binding protein2e-22107
NC_015387:1803938:1821300182130018224931194Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeextracellular solute-binding protein family 13e-22106
NC_004460:1313468:1337845133784513389751131Vibrio vulnificus CMCP6 chromosome II, complete sequenceperiplasmic maltose-binding protein3e-22106
NC_015690:2039215:2052584205258420539121329Paenibacillus mucilaginosus KNP414 chromosome, complete genomeextracellular solute-binding protein7e-22105
NC_014221:1277022:1294367129436712955571191Truepera radiovictrix DSM 17093 chromosome, complete genomeextracellular solute-binding protein family 15e-22105
NC_016935:2567039:2601872260187226032001329Paenibacillus mucilaginosus 3016 chromosome, complete genomeextracellular solute-binding protein4e-22105
NC_014246:1787154:1798378179837817996131236Mobiluncus curtisii ATCC 43063 chromosome, complete genomesugar ABC transporter substrate-binding protein6e-1789
NC_009009:1295607:1315431131543113166871257Streptococcus sanguinis SK36, complete genomeMaltose/maltodextrin ABC transporter, sugar-binding protein MalX, putative6e-1582.4
NC_014831:2258398:2263861226386122652011341Thermaerobacter marianensis DSM 12885 chromosome, complete genomeextracellular solute-binding protein family 14e-1479.7
NC_020291:6310000:6326586632658663278271242Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeABC-type sugar transport system, periplasmic component6e-1479
NC_015520:2859820:2864204286420428655201317Mahella australiensis 50-1 BON chromosome, complete genomefamily 1 extracellular solute-binding protein7e-1479
NC_011899:86800:9030190301915361236Halothermothrix orenii H 168, complete genomeextracellular solute-binding protein family 11e-1378.2
NC_017954:161787:1874481874481890011554Thermogladius cellulolyticus 1633 chromosome, complete genomecyclomaltodextrin binding protein1e-1378.2
NC_014364:1899983:1918380191838019196721293Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 13e-1377
NC_020134:1783000:1783007178300717843291323Clostridium stercorarium subsp. stercorarium DSM 8532, completeextracellular solute-binding protein, family 13e-1377
NC_016641:1984206:1986876198687619881261251Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein4e-1376.6
NC_015690:7785875:7785875778587577872091335Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-1376.6
NC_014958:514225:5359135359135372171305Deinococcus maricopensis DSM 21211 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1275.1
NC_010572:2843589:2863797286379728650441248Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter substrate-binding protein1e-1274.7
NC_020210:1951746:1962799196279919641211323Geobacillus sp. GHH01, complete genomeExtracellular solute-binding protein family 11e-1274.7
NC_015577:1462874:1468358146835814696891332Treponema azotonutricium ZAS-9 chromosome, complete genomeputative family 1 extracellular solute-binding protein1e-1274.7
NC_017218:31247:4968249682510551374Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeABC transporter substrate-binding protein4e-1272.8
NC_013406:3926531:3941852394185239432551404Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-1272.4
NC_014652:2323598:2330356233035623315821227Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 11e-1171.6
NC_016641:4011000:4028112402811240294521341Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1171.2
NC_008261:1249595:1270941127094112722001260Clostridium perfringens ATCC 13124, complete genomesugar ABC transporter, sugar-binding protein1e-1171.2
NC_015949:2101302:2106691210669121079171227Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1171.2
NC_014721:373607:3913783913783926041227Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeextracellular solute-binding protein family 11e-1171.2
NC_010001:4168817:4172661417266141740161356Clostridium phytofermentans ISDg, complete genomeextracellular solute-binding protein family 12e-1170.9
NC_009437:475817:4947954947954960211227Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular solute-binding protein3e-1170.5
NC_016641:2618587:2645924264592426471771254Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-1170.5
NC_012034:438000:4587584587584599841227Anaerocellum thermophilum DSM 6725, complete genomeextracellular solute-binding protein family 14e-1170.1
NC_003366:461602:4790084790084802761269Clostridium perfringens str. 13, complete genomehypothetical protein4e-1169.7
NC_012925:140000:1545701545701558441275Streptococcus suis P1/7, complete genomeextracellular solute-binding lipoprotein7e-1168.9
NC_012924:142500:1543751543751556491275Streptococcus suis SC84, complete genomeextracellular solute-binding lipoprotein7e-1168.9
NC_012926:140000:1543541543541556281275Streptococcus suis BM407 chromosome, complete genomeextracellular solute-binding lipoprotein7e-1168.9
NC_009443:142500:1541291541291555561428Streptococcus suis 98HAH33, complete genomesugar ABC transporter periplasmic protein1e-1068.2
NC_014392:412916:4339374339374351631227Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeextracellular solute-binding protein family 11e-1067.8
NC_014720:2420455:2437885243788524391111227Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 13e-1067
NC_016935:1365463:1418581141858114199781398Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein8e-1065.5
NC_012669:1011473:1017836101783610192361401Beutenbergia cavernae DSM 12333, complete genomeextracellular solute-binding protein family 18e-1065.5
NC_011898:3772899:3791754379175437930851332Clostridium cellulolyticum H10, complete genomeextracellular solute-binding protein family 11e-0964.7
NC_015152:272500:2726852726852739591275Spirochaeta sp. Buddy chromosome, complete genomeextracellular solute-binding protein family 11e-0964.7
NC_015588:1847500:1861534186153418627991266Isoptericola variabilis 225 chromosome, complete genomeextracellular solute-binding protein family 12e-0964.3
NC_009523:907775:9242759242759255821308Roseiflexus sp. RS-1 chromosome, complete genomeextracellular solute-binding protein2e-0964.3
NC_015690:3941113:3999206399920640005281323Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-0963.9
NC_014364:3500041:3506794350679435080321239Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 15e-0962.8
NC_014364:815346:8153468153468166261281Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 17e-0962.4
NC_016109:2938000:2945031294503129464221392Kitasatospora setae KM-6054, complete genomechitobiose ABC transporter substrate-binding protein2e-0860.8
NC_015052:2383865:2388169238816923895091341Bifidobacterium longum subsp. infantis 157F, complete genomeABC transporter substrate-binding protein4e-0859.7
NC_011653:1574415:1579050157905015803001251Thermosipho africanus TCF52B, complete genomelactose-binding protein5e-0859.3
NC_013517:773280:7751637751637764041242Sebaldella termitidis ATCC 33386, complete genomeextracellular solute-binding protein family 11e-0758.5
NC_016641:4653889:4671448467144846727221275Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-0758.5
NC_015953:5865733:5905559590555959068211263Streptomyces sp. SirexAA-E chromosome, complete genomefamily 1 extracellular solute-binding protein2e-0757.8
NC_007435:1446916:1485572148557214868131242Burkholderia pseudomallei 1710b chromosome II, complete sequenceABC transporter, substrate-binding protein2e-0757.8
NC_014364:815346:8385568385568398301275Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 12e-0757.4
NC_009078:2718741:2757397275739727585961200Burkholderia pseudomallei 1106a chromosome II, complete sequenceABC transporter, carbohydrate uptake transporter-1 (CUT1) family, periplasmic carbohydrate-binding protein2e-0757.4
NC_014644:1532500:1554471155447115556941224Gardnerella vaginalis ATCC 14019 chromosome, complete genomeABC transporter binding protein3e-0757
NC_011894:5787990:5789470578947057907021233Methylobacterium nodulans ORS 2060, complete genomeextracellular solute-binding protein family 13e-0757
NC_020291:1045058:1051597105159710528561260Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeextracellular solute-binding protein, family 14e-0756.6
NC_013526:65495:8741487414887631350Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeextracellular solute-binding protein family 13e-0756.6
UCMB5137:2054735:2092017209201720933151299Bacillus atrophaeus UCMB-5137pectin degradation byproducts-binding lipoprotein3e-0756.6
NC_014169:1909482:1922288192228819235621275Bifidobacterium longum subsp. longum JDM301 chromosome, completefamily 1 extracellular solute-binding protein8e-0755.5
NC_017079:4550406:4558150455815045595291380Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative ABC transporter substrate binding protein1e-0655.1
NC_012914:2360989:2377094237709423785211428Paenibacillus sp. JDR-2, complete genomeextracellular solute-binding protein family 12e-0653.9
NC_014532:1713987:1728058172805817293681311Halomonas elongata DSM 2581, complete genomeABC-type transport system periplasmic substrate-binding protein3e-0653.5
NC_013521:302574:3359023359023371611260Sanguibacter keddieii DSM 10542, complete genomeABC-type sugar transport system, periplasmic component4e-0653.1
NC_013316:2968000:2968117296811729693911275Clostridium difficile R20291, complete genomeputative extracellular solute-binding protein4e-0653.1
NC_013315:2887559:2887559288755928888331275Clostridium difficile CD196 chromosome, complete genomeextracellular solute-binding protein4e-0653.1
NC_017179:2895571:2895571289557128968451275Clostridium difficile BI1, complete genomeextracellular solute-binding protein4e-0653.1
NC_016860:4024000:4046385404638540476951311Salmonella enterica subsp. enterica serovar Typhimurium strglycerol-3-phosphate-binding periplasmic protein4e-0653.1
NC_014364:1263427:1278910127891012802081299Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 13e-0653.1
NC_014829:1154520:1155755115575511570861332Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeextracellular solute-binding protein family 15e-0652.8
NC_019896:1989997:1999551199955120007561206Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSugar ABC transporter substrate-binding protein6e-0652.8
NC_021182:966839:9705849705849718611278Clostridium pasteurianum BC1, complete genomeABC-type sugar transport system, periplasmic component6e-0652.4
NC_016641:4653889:4669035466903546702971263Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-0652.4
NC_014622:653599:6574276574276587221296Paenibacillus polymyxa SC2 chromosome, complete genomemultiple sugar-binding transporter multiple sugar-binding protein8e-0652
NC_013929:3206688:3212895321289532143041410Streptomyces scabiei 87.22 chromosome, complete genomeextracellular solute-binding lipoprotein8e-0652
NC_013850:4829455:4856074485607448573841311Klebsiella variicola At-22 chromosome, complete genomeextracellular solute-binding protein family 19e-0652
NC_011283:5011497:5033154503315450344641311Klebsiella pneumoniae 342 chromosome, complete genomeABC transporter substrate-binding protein9e-0652
NC_014483:4891100:4892084489208448933491266Paenibacillus polymyxa E681 chromosome, complete genomeABC-type sugar transport system, periplasmic component9e-0652