Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:1783000 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
178300717843291323extracellular solute-binding protein family 1QuickGO ontologyBLASTP
17851521785289138hypothetical protein
17894231789701279CRISPR-associated protein Cas2 familyQuickGO ontologyBLASTP
17897071790699993CRISPR-associated endonuclease Cas1QuickGO ontologyBLASTP
17907361791239504CRISPR-associated protein Cas4QuickGO ontologyBLASTP
179124417935892346CRISPR-associated helicase Cas3CRISPR-associated endonuclease Cas3-HDQuickGO ontologyBLASTP
17936231794375753crispr-associated protein Cas5 tneap subtypeQuickGO ontologyBLASTP
17943721795247876CRISPR-associated autoregulator Cst2 familyQuickGO ontologyBLASTP
179525017969441695CRISPR-associated protein Cas8a1Cst1 subtype I-BTNEAPQuickGO ontologyBLASTP
17969631797679717CRISPR-associated endoribonuclease Cas6QuickGO ontologyBLASTP
17976841797860177hypothetical protein
179788517995161632NADH oxidase NoxQuickGO ontologyBLASTP
179956118007751215MgtCSapB transporter family proteinQuickGO ontologyBLASTP
18010221801168147hypothetical proteinBLASTP
18012791801584306hypothetical proteinBLASTP